Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CCU02_RS24645 Genome accession   NZ_CP031916
Coordinates   4778219..4778695 (-) Length   158 a.a.
NCBI ID   WP_001186717.1    Uniprot ID   -
Organism   Escherichia coli O45:H2 strain FWSEC0003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4773219..4783695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCU02_RS24605 (CCU02_025795) mug 4774584..4775090 (-) 507 WP_000228937.1 G/U mismatch-specific DNA glycosylase -
  CCU02_RS24615 (CCU02_025805) - 4775390..4776235 (-) 846 WP_001274557.1 DUF4942 domain-containing protein -
  CCU02_RS24620 (CCU02_025810) - 4776320..4776517 (-) 198 WP_000772026.1 DUF957 domain-containing protein -
  CCU02_RS24625 (CCU02_025815) - 4776537..4777025 (-) 489 WP_001054229.1 DUF5983 family protein -
  CCU02_RS24630 (CCU02_025820) - 4777022..4777402 (-) 381 WP_000854687.1 TA system toxin CbtA family protein -
  CCU02_RS24635 (CCU02_025825) - 4777491..4777859 (-) 369 WP_001443392.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CCU02_RS24640 (CCU02_025830) - 4777935..4778156 (-) 222 WP_000692312.1 DUF987 domain-containing protein -
  CCU02_RS24645 (CCU02_025835) radC 4778219..4778695 (-) 477 WP_001186717.1 RadC family protein Machinery gene
  CCU02_RS24650 (CCU02_025840) - 4778711..4779184 (-) 474 WP_001368734.1 antirestriction protein -
  CCU02_RS24655 (CCU02_025845) - 4779278..4779523 (-) 246 WP_001164974.1 hypothetical protein -
  CCU02_RS24660 (CCU02_025850) - 4779523..4779963 (-) 441 Protein_4774 DUF932 domain-containing protein -
  CCU02_RS24665 (CCU02_025855) - 4780082..4781860 (-) 1779 WP_001243195.1 reverse transcriptase/maturase family protein -
  CCU02_RS24670 (CCU02_025860) - 4782373..4782753 (-) 381 Protein_4776 DUF932 domain-containing protein -
  CCU02_RS24680 (CCU02_025870) - 4782973..4783383 (-) 411 WP_000848829.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17655.30 Da        Isoelectric Point: 6.9859

>NTDB_id=273533 CCU02_RS24645 WP_001186717.1 4778219..4778695(-) (radC) [Escherichia coli O45:H2 strain FWSEC0003]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLLTERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=273533 CCU02_RS24645 WP_001186717.1 4778219..4778695(-) (radC) [Escherichia coli O45:H2 strain FWSEC0003]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGTTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATTAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTCTCACCGAACGTCTGGTACAGGCACTGGCCCTGG
TTGACATCCGGGTGCCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65.823

0.38