Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CCU02_RS23825 Genome accession   NZ_CP031916
Coordinates   4625608..4626084 (+) Length   158 a.a.
NCBI ID   WP_001186195.1    Uniprot ID   -
Organism   Escherichia coli O45:H2 strain FWSEC0003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4620608..4631084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCU02_RS23795 (CCU02_024915) - 4621477..4621672 (+) 196 Protein_4604 DUF905 family protein -
  CCU02_RS23805 (CCU02_024925) - 4621790..4622167 (+) 378 Protein_4605 DUF932 domain-containing protein -
  CCU02_RS23810 (CCU02_024930) - 4622680..4624458 (+) 1779 WP_001243195.1 reverse transcriptase/maturase family protein -
  CCU02_RS23815 (CCU02_024935) - 4624577..4625017 (+) 441 Protein_4607 DUF932 domain-containing protein -
  CCU02_RS23820 (CCU02_024940) - 4625108..4625593 (+) 486 WP_000213700.1 antirestriction protein -
  CCU02_RS23825 (CCU02_024945) radC 4625608..4626084 (+) 477 WP_001186195.1 RadC family protein Machinery gene
  CCU02_RS23830 (CCU02_024950) - 4626153..4626374 (+) 222 WP_001220316.1 DUF987 domain-containing protein -
  CCU02_RS23835 (CCU02_024955) - 4626449..4626823 (+) 375 WP_000017094.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CCU02_RS23840 (CCU02_024960) - 4626870..4627247 (+) 378 WP_000854698.1 TA system toxin CbtA family protein -
  CCU02_RS23845 (CCU02_024965) - 4627244..4627732 (+) 489 WP_001054226.1 DUF5983 family protein -
  CCU02_RS23850 (CCU02_024970) - 4627744..4627941 (+) 198 WP_000839251.1 DUF957 domain-containing protein -
  CCU02_RS23855 (CCU02_024975) - 4628026..4628868 (+) 843 WP_001280439.1 DUF4942 domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17730.38 Da        Isoelectric Point: 7.6152

>NTDB_id=273530 CCU02_RS23825 WP_001186195.1 4625608..4626084(+) (radC) [Escherichia coli O45:H2 strain FWSEC0003]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVGFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGRQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=273530 CCU02_RS23825 WP_001186195.1 4625608..4626084(+) (radC) [Escherichia coli O45:H2 strain FWSEC0003]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGGCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTACTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATTACGGAGCGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAGACAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392