Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HHAL_RS12150 Genome accession   NC_008789
Coordinates   2639705..2641216 (-) Length   503 a.a.
NCBI ID   WP_011815189.1    Uniprot ID   A1WZQ5
Organism   Halorhodospira halophila SL1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2634705..2646216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHAL_RS12115 (Hhal_2398) trmB 2635874..2636569 (-) 696 WP_011815183.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  HHAL_RS12120 (Hhal_2399) - 2636566..2637354 (-) 789 WP_011815184.1 thiazole synthase -
  HHAL_RS12125 (Hhal_2400) thiS 2637391..2637594 (-) 204 WP_041595720.1 sulfur carrier protein ThiS -
  HHAL_RS12135 (Hhal_2401) - 2637815..2638273 (-) 459 WP_011815186.1 Rrf2 family transcriptional regulator -
  HHAL_RS12140 (Hhal_2402) - 2638329..2638715 (-) 387 WP_011815187.1 SirB2 family protein -
  HHAL_RS12810 (Hhal_2403) - 2639010..2639672 (+) 663 WP_011815188.1 TorF family putative porin -
  HHAL_RS12150 (Hhal_2404) comM 2639705..2641216 (-) 1512 WP_011815189.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HHAL_RS12155 (Hhal_2405) - 2641285..2641560 (-) 276 WP_011815190.1 accessory factor UbiK family protein -
  HHAL_RS12160 (Hhal_2406) - 2641785..2642123 (+) 339 WP_011815191.1 P-II family nitrogen regulator -
  HHAL_RS12165 (Hhal_2407) - 2642160..2643404 (+) 1245 WP_011815192.1 ammonium transporter -
  HHAL_RS12170 (Hhal_2408) - 2643549..2644331 (+) 783 WP_011815193.1 hypothetical protein -
  HHAL_RS12175 (Hhal_2409) - 2644341..2644946 (+) 606 WP_011815194.1 ABC transporter ATP-binding protein -
  HHAL_RS12180 (Hhal_2410) fetB 2644943..2645740 (+) 798 WP_011815195.1 iron export ABC transporter permease subunit FetB -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 52723.14 Da        Isoelectric Point: 6.7785

>NTDB_id=27353 HHAL_RS12150 WP_011815189.1 2639705..2641216(-) (comM) [Halorhodospira halophila SL1]
MALAVTRARAALGVAAPEVQVEVHLAPGLPAFSLVGLPQAEVREARDRVRSAIINSGLEFPVGRVTVNLAPADLPKGGGR
FDLAIAVGVLAASGQAHGELESLEFIGELALGGQLREVGAILPAARAAREAGRRLIIPGGDAAEAALVHPGGTVAAQRLL
AVLDHLDGREPLPPVGSPTGAQERSPGPDLADVRGQAGPRRALEVAAAGGHNLLLSGPPGTGKSMLAERLPGLLPPLPED
EALEAAAVRSVSGEGVDPASWRIPAFRAPHHSISPAALIGGGQPPRPGEVSLAHRGVLFLDEFPELPRNALEALREPLQA
RRVSIARSNARVTYPAAFQLVAAMNPCPCGYHGDPRGECRCTPDQVARYRDRITGPLLDRFDIAVEVPRLSARELTAAPA
AEATEQVAERVARARERRRERSGRIAAELSGEVLHAACPLEPEAEATLERATEVIGLSPRGHHRLLRVARTIADLEGMDA
IDARYVAEAVGLRRGLEQRGGVG

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=27353 HHAL_RS12150 WP_011815189.1 2639705..2641216(-) (comM) [Halorhodospira halophila SL1]
ATGGCACTGGCGGTTACCCGGGCGCGGGCGGCGCTCGGTGTGGCGGCCCCCGAGGTCCAGGTGGAGGTCCACCTGGCGCC
GGGGCTGCCTGCGTTCTCACTGGTCGGCCTGCCCCAGGCCGAGGTGCGCGAGGCCCGGGACCGGGTCCGCAGCGCCATCA
TCAACAGCGGCCTGGAGTTTCCCGTCGGCCGCGTCACGGTCAACCTGGCCCCGGCGGATCTGCCCAAGGGCGGCGGACGC
TTCGATCTGGCCATCGCGGTCGGCGTGCTGGCGGCGTCGGGTCAGGCCCACGGCGAACTCGAATCGCTGGAGTTCATCGG
CGAGCTGGCCCTGGGCGGCCAGCTCCGCGAAGTGGGCGCCATCCTCCCGGCGGCACGGGCCGCCCGCGAGGCCGGCCGGC
GGCTGATCATCCCGGGCGGCGACGCCGCCGAGGCGGCATTGGTTCACCCCGGGGGCACGGTGGCCGCGCAGCGCCTGCTG
GCGGTGCTGGACCACCTGGACGGCCGCGAGCCCCTGCCCCCGGTGGGGTCGCCGACCGGGGCGCAGGAACGCTCTCCAGG
CCCCGATCTCGCCGACGTCCGCGGCCAGGCCGGCCCGCGCCGGGCGCTGGAGGTCGCCGCCGCGGGGGGGCACAACCTGC
TGCTCAGCGGCCCGCCCGGTACCGGCAAGAGCATGCTCGCCGAACGCCTGCCCGGGCTGTTGCCGCCGCTCCCGGAAGAC
GAGGCCCTGGAGGCGGCGGCGGTGCGCTCGGTCAGTGGCGAGGGGGTGGATCCGGCCAGCTGGCGGATCCCGGCCTTCCG
GGCCCCCCACCACAGCATCTCCCCGGCGGCGCTGATCGGTGGCGGGCAGCCGCCCCGCCCCGGCGAGGTCTCCCTGGCCC
ACCGCGGCGTGCTCTTCCTCGACGAGTTCCCCGAACTGCCCCGCAACGCCCTGGAGGCGCTGCGTGAGCCCCTGCAGGCG
CGGCGGGTGAGCATCGCCCGCAGCAACGCCCGGGTCACCTACCCGGCGGCCTTCCAGCTGGTGGCGGCCATGAACCCCTG
TCCCTGCGGCTACCACGGCGACCCCCGCGGCGAGTGCCGCTGCACCCCGGATCAGGTGGCGCGCTACCGCGACCGGATCA
CCGGGCCGCTGCTCGATCGCTTCGATATCGCCGTCGAGGTGCCGCGGCTCAGCGCCCGGGAGCTGACCGCCGCGCCGGCG
GCTGAGGCCACCGAGCAGGTGGCCGAACGGGTGGCCCGGGCCCGGGAGCGGCGGCGGGAGCGCTCCGGGCGGATCGCCGC
CGAGCTCAGCGGGGAGGTCCTGCACGCGGCCTGCCCCCTCGAGCCGGAGGCCGAGGCGACCCTGGAGCGGGCCACCGAGG
TCATCGGCCTCTCGCCGCGGGGGCACCACCGCCTGCTGCGGGTGGCGCGGACGATCGCCGATCTGGAAGGCATGGATGCC
ATCGACGCCCGCTACGTGGCCGAGGCGGTGGGGTTGCGCCGGGGGCTCGAGCAGCGGGGCGGGGTGGGGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-138)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1WZQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.707

98.41

0.499
  comM Vibrio campbellii strain DS40M4

49.697

98.41

0.489
  comM Haemophilus influenzae Rd KW20

49.098

99.205

0.487
  comM Glaesserella parasuis strain SC1401

47.695

99.205

0.473
  comM Legionella pneumophila str. Paris

45.686

100

0.463
  comM Legionella pneumophila strain ERS1305867

45.686

100

0.463
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.176

98.012

0.404

Multiple sequence alignment