Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CCU02_RS21890 Genome accession   NZ_CP031916
Coordinates   4234696..4235211 (-) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli O45:H2 strain FWSEC0003     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4229696..4240211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCU02_RS21865 (CCU02_022950) ygaZ 4230095..4230832 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  CCU02_RS21870 (CCU02_022955) ygaH 4230822..4231157 (+) 336 WP_000119754.1 L-valine transporter subunit YgaH -
  CCU02_RS21875 (CCU02_022960) emrR 4231248..4231778 (+) 531 WP_000378435.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CCU02_RS21880 (CCU02_022965) emrA 4231905..4233077 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CCU02_RS21885 (CCU02_022970) emrB 4233094..4234632 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CCU02_RS21890 (CCU02_022975) luxS 4234696..4235211 (-) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  CCU02_RS21895 (CCU02_022980) gshA 4235361..4236917 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  CCU02_RS21900 (CCU02_022985) yqaA 4236990..4237418 (-) 429 WP_001287454.1 YqaA family protein -
  CCU02_RS21905 (CCU02_022990) yqaB 4237415..4237981 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CCU02_RS21935 (CCU02_023020) csrA 4239439..4239624 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=273523 CCU02_RS21890 WP_001130210.1 4234696..4235211(-) (luxS) [Escherichia coli O45:H2 strain FWSEC0003]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=273523 CCU02_RS21890 WP_001130210.1 4234696..4235211(-) (luxS) [Escherichia coli O45:H2 strain FWSEC0003]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment