Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   HHAL_RS11640 Genome accession   NC_008789
Coordinates   2532155..2533102 (-) Length   315 a.a.
NCBI ID   WP_011815090.1    Uniprot ID   A1WZF6
Organism   Halorhodospira halophila SL1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2527155..2538102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHAL_RS11615 (Hhal_2300) - 2528211..2528609 (+) 399 WP_011815085.1 hypothetical protein -
  HHAL_RS11620 (Hhal_2301) radC 2528683..2529357 (+) 675 WP_011815086.1 DNA repair protein RadC -
  HHAL_RS11625 (Hhal_2302) rpoH 2529404..2530267 (-) 864 WP_011815087.1 RNA polymerase sigma factor RpoH -
  HHAL_RS11630 (Hhal_2303) ftsX 2530432..2531478 (-) 1047 WP_011815088.1 permease-like cell division protein FtsX -
  HHAL_RS11635 (Hhal_2304) ftsE 2531478..2532158 (-) 681 WP_011815089.1 cell division ATP-binding protein FtsE -
  HHAL_RS11640 (Hhal_2305) pilA 2532155..2533102 (-) 948 WP_011815090.1 signal recognition particle-docking protein FtsY Machinery gene
  HHAL_RS11645 (Hhal_2306) - 2533230..2534561 (+) 1332 WP_011815091.1 pitrilysin family protein -
  HHAL_RS11650 (Hhal_2307) - 2534561..2535916 (+) 1356 WP_011815092.1 pitrilysin family protein -
  HHAL_RS11655 (Hhal_2308) rsmD 2535913..2536503 (+) 591 WP_011815093.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  HHAL_RS11660 (Hhal_2309) coaD 2536514..2537008 (+) 495 WP_011815094.1 pantetheine-phosphate adenylyltransferase -
  HHAL_RS11665 (Hhal_2310) - 2537032..2537412 (+) 381 WP_011815095.1 hypothetical protein -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 33681.27 Da        Isoelectric Point: 5.0353

>NTDB_id=27352 HHAL_RS11640 WP_011815090.1 2532155..2533102(-) (pilA) [Halorhodospira halophila SL1]
MSESEKTDKRPGLMGRLRNGLRRTRSGLTEGLATLFVGRRELDDELLEELEMRLLQADVGMEATQKVLDGLVERLGGSGG
GTGETVLEALRSEIVKVLEPVEKPLQIDTDKRPFVILTVGVNGAGKTTTIGKLAARFQNEGRSVMVAAGDTFRAAAVDQL
QQWGERVGCPVIAQPTGSDPASVVFDAHQAARARGADVLIADTAGRLHTQDNLMEELRKIRRVLGRQDADAPHETLLVLD
GGNGQNALAQAEQFGAAVNVTGLAVTKLDGTARGGVLLALAERLQVPVRYIGVGEKVEDLRTFRAADFAEALTAE

Nucleotide


Download         Length: 948 bp        

>NTDB_id=27352 HHAL_RS11640 WP_011815090.1 2532155..2533102(-) (pilA) [Halorhodospira halophila SL1]
ATGAGCGAAAGCGAGAAGACCGACAAACGCCCCGGGCTGATGGGGCGACTGCGCAACGGGCTGCGGCGGACCCGCAGCGG
GCTCACCGAAGGGCTGGCGACGTTGTTCGTTGGCCGCCGCGAACTCGACGACGAGCTCCTCGAGGAGCTGGAGATGCGTC
TGCTCCAGGCCGACGTCGGCATGGAGGCGACGCAGAAGGTGCTCGACGGTCTCGTCGAGCGCCTCGGTGGTTCCGGCGGC
GGTACCGGCGAGACGGTGCTGGAGGCCCTGCGCAGCGAGATCGTCAAGGTGCTCGAGCCGGTGGAGAAGCCGCTGCAGAT
CGATACCGACAAGCGGCCCTTCGTCATCCTCACGGTCGGGGTCAACGGGGCCGGCAAGACCACCACCATCGGCAAGCTGG
CGGCCCGTTTTCAGAACGAGGGGCGGTCGGTGATGGTCGCCGCAGGCGATACCTTCCGCGCCGCTGCAGTGGATCAGCTC
CAGCAGTGGGGCGAACGGGTCGGTTGCCCGGTGATCGCCCAGCCCACGGGCTCGGATCCCGCCTCGGTGGTCTTCGATGC
CCACCAGGCCGCCCGCGCCCGCGGTGCGGATGTGCTCATCGCCGATACCGCCGGCCGCCTGCACACCCAGGACAACCTCA
TGGAGGAGCTGCGCAAGATCCGCCGCGTGCTCGGCCGGCAGGATGCCGATGCGCCCCACGAGACCCTCCTTGTGCTCGAC
GGTGGCAACGGCCAGAACGCACTGGCCCAGGCCGAGCAGTTCGGCGCGGCGGTGAACGTGACCGGTCTGGCCGTGACCAA
GCTGGACGGGACCGCCCGTGGTGGCGTGCTGCTGGCCCTGGCCGAGCGGCTCCAGGTGCCGGTGCGCTACATCGGCGTGG
GTGAGAAGGTCGAGGACCTGCGCACCTTCCGTGCGGCCGACTTTGCCGAGGCGCTGACCGCCGAATGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(113-312)

SRP54-type protein, helical bundle domain (SRP54_N)

(28-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1WZF6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

50.82

96.825

0.492

Multiple sequence alignment