Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CCU02_RS18195 Genome accession   NZ_CP031916
Coordinates   3471089..3471565 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli O45:H2 strain FWSEC0003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3466089..3476565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCU02_RS18165 (CCU02_019080) - 3466651..3467061 (+) 411 WP_000846713.1 hypothetical protein -
  CCU02_RS18175 (CCU02_019090) - 3467282..3467662 (+) 381 Protein_3519 DUF932 domain-containing protein -
  CCU02_RS18180 (CCU02_019095) - 3468175..3469953 (+) 1779 WP_001243195.1 reverse transcriptase/maturase family protein -
  CCU02_RS18185 (CCU02_019100) - 3470072..3470512 (+) 441 Protein_3521 DUF932 domain-containing protein -
  CCU02_RS18190 (CCU02_019105) - 3470594..3471073 (+) 480 WP_000860060.1 antirestriction protein -
  CCU02_RS18195 (CCU02_019110) radC 3471089..3471565 (+) 477 WP_001186773.1 RadC family protein Machinery gene
  CCU02_RS18200 (CCU02_019115) yeeT 3471628..3471849 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  CCU02_RS18205 (CCU02_019120) cbeA 3471923..3472291 (+) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CCU02_RS18210 (CCU02_019125) cbtA 3472380..3472753 (+) 374 Protein_3526 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CCU02_RS18215 (CCU02_019130) yeeW 3472750..3472944 (+) 195 WP_000988599.1 DUF5983 family protein -
  CCU02_RS18220 (CCU02_019135) - 3472990..3473070 (+) 81 Protein_3528 hypothetical protein -
  CCU02_RS30845 (CCU02_019140) - 3473359..3473532 (-) 174 WP_032082634.1 transposase domain-containing protein -
  CCU02_RS30850 (CCU02_019145) - 3473559..3473741 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CCU02_RS18235 (CCU02_019150) tmaR 3473842..3474171 (-) 330 WP_000450409.1 DUF496 family protein -
  CCU02_RS18240 (CCU02_019155) yeeA 3474343..3475401 (-) 1059 WP_001200891.1 FUSC family protein -
  CCU02_RS18245 (CCU02_019160) sbmC 3475599..3476072 (-) 474 WP_001105383.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=273513 CCU02_RS18195 WP_001186773.1 3471089..3471565(+) (radC) [Escherichia coli O45:H2 strain FWSEC0003]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=273513 CCU02_RS18195 WP_001186773.1 3471089..3471565(+) (radC) [Escherichia coli O45:H2 strain FWSEC0003]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392