Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CCU02_RS03335 Genome accession   NZ_CP031916
Coordinates   703596..704138 (+) Length   180 a.a.
NCBI ID   WP_015740440.1    Uniprot ID   -
Organism   Escherichia coli O45:H2 strain FWSEC0003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 698596..709138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCU02_RS03305 (CCU02_003515) - 699300..700175 (+) 876 WP_001039469.1 GTPase family protein -
  CCU02_RS03310 (CCU02_003520) - 700419..701135 (+) 717 WP_000174910.1 WYL domain-containing protein -
  CCU02_RS03315 (CCU02_003525) - 701171..701623 (+) 453 WP_000734322.1 hypothetical protein -
  CCU02_RS03320 (CCU02_003530) - 701695..702168 (+) 474 WP_001298943.1 hypothetical protein -
  CCU02_RS03325 (CCU02_003535) - 702288..703109 (+) 822 WP_001234408.1 DUF932 domain-containing protein -
  CCU02_RS03330 (CCU02_003540) - 703140..703583 (+) 444 WP_001096016.1 antirestriction protein -
  CCU02_RS03335 (CCU02_003545) radC 703596..704138 (+) 543 WP_015740440.1 DNA repair protein RadC Machinery gene
  CCU02_RS03340 (CCU02_003550) - 704135..704356 (+) 222 WP_000691983.1 DUF987 domain-containing protein -
  CCU02_RS03345 (CCU02_003555) - 704382..704747 (+) 366 WP_001059301.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CCU02_RS03350 (CCU02_003560) - 704786..705157 (+) 372 WP_001193489.1 TA system toxin CbtA family protein -
  CCU02_RS29925 (CCU02_003575) - 705957..706100 (-) 144 Protein_656 restriction endonuclease -
  CCU02_RS30750 - 706182..706244 (+) 63 Protein_657 HNH endonuclease -
  CCU02_RS03370 (CCU02_003580) nanS 706312..707292 (-) 981 WP_000991444.1 sialate O-acetylesterase -
  CCU02_RS03375 (CCU02_003585) nanM 707357..708463 (-) 1107 WP_001298927.1 N-acetylneuraminate epimerase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20161.13 Da        Isoelectric Point: 7.9875

>NTDB_id=273485 CCU02_RS03335 WP_015740440.1 703596..704138(+) (radC) [Escherichia coli O45:H2 strain FWSEC0003]
MNTTISPLLSQPELFPVSVMAQHGCLLPTTSGLTPYAQRTIRRAMNLLDKYLRQPGIAFTSSTAARDWLRLHLARQEREV
FMVLYLDNQHRLLESETLFAGSVNHVQVHSREVVKSALRFNAAAVVLAHNHPSGDPEPSQCDRNITGRLKEALELVDVKT
LDHLVVGRDGIVSFAERGWL

Nucleotide


Download         Length: 543 bp        

>NTDB_id=273485 CCU02_RS03335 WP_015740440.1 703596..704138(+) (radC) [Escherichia coli O45:H2 strain FWSEC0003]
ATGAATACCACAATATCCCCACTGTTATCGCAGCCTGAGCTTTTTCCGGTGTCGGTCATGGCTCAGCATGGCTGTTTACT
CCCTACGACTTCCGGACTGACACCCTACGCCCAACGGACCATTCGCCGCGCTATGAACCTGCTGGATAAATATCTGCGTC
AGCCCGGTATAGCCTTTACCTCAAGCACTGCAGCCCGTGACTGGCTCCGGTTACACCTGGCCAGACAGGAGCGGGAGGTG
TTTATGGTGCTCTACCTCGATAATCAGCATCGTTTACTGGAGAGTGAAACGCTGTTCGCCGGTTCGGTAAACCATGTGCA
GGTTCATTCCCGTGAGGTAGTGAAGTCGGCGCTTCGTTTCAATGCCGCAGCTGTCGTGCTGGCGCATAACCATCCCTCCG
GTGATCCGGAGCCCAGCCAATGCGATCGCAACATTACGGGCAGGCTTAAAGAAGCGTTAGAACTGGTTGATGTGAAAACG
CTCGATCATCTTGTTGTCGGTCGGGATGGCATTGTGTCGTTCGCTGAGCGAGGTTGGTTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(60-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

42.763

84.444

0.361

Multiple sequence alignment