NTDB

Overview

Name	radC	Type	Machinery gene
Locus tag	CAM50_RS09540	Genome accession	NZ_CP031913
Coordinates	1920510..1920986 (-)	Length	158 a.a.
NCBI ID	WP_001186192.1	Uniprot ID	A0A0H3JIA8
Organism	Escherichia coli O157:H7 strain FWSEC0004
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1915510..1925986

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CAM50_RS09490 (CAM50_0009980)	sbmC	1916002..1916475 (+)	474	WP_001105393.1	DNA gyrase inhibitor SbmC	-
CAM50_RS09495 (CAM50_0009985)	yeeA	1916674..1917732 (+)	1059	WP_001202488.1	FUSC family protein	-
CAM50_RS09500 (CAM50_0009990)	tmaR	1917904..1918233 (+)	330	WP_000450409.1	DUF496 family protein	-
CAM50_RS09505 (CAM50_0009995)	-	1918334..1918516 (-)	183	WP_001016346.1	EutP/PduV family microcompartment system protein	-
CAM50_RS09510 (CAM50_0010000)	-	1918570..1918716 (+)	147	Protein_1842	transposase domain-containing protein	-
CAM50_RS09515 (CAM50_0010005)	-	1919005..1919085 (-)	81	Protein_1843	hypothetical protein	-
CAM50_RS09520 (CAM50_0010010)	yeeW	1919131..1919325 (-)	195	WP_000988600.1	DUF5983 family protein	-
CAM50_RS09525 (CAM50_0010015)	cbtA	1919322..1919695 (-)	374	Protein_1845	type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA	-
CAM50_RS09530 (CAM50_0010020)	cbeA	1919784..1920152 (-)	369	WP_001285587.1	type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA	-
CAM50_RS09535 (CAM50_0010025)	yeeT	1920226..1920447 (-)	222	WP_000692323.1	DUF987 domain-containing protein	-
CAM50_RS09540 (CAM50_0010030)	radC	1920510..1920986 (-)	477	WP_001186192.1	RadC family protein	Machinery gene
CAM50_RS09545 (CAM50_0010035)	-	1921001..1921480 (-)	480	WP_000860079.1	antirestriction protein	-
CAM50_RS09550 (CAM50_0010040)	-	1921562..1922383 (-)	822	WP_001234544.1	DUF932 domain-containing protein	-
CAM50_RS09560 (CAM50_0010050)	-	1922604..1923014 (-)	411	WP_000846711.1	hypothetical protein	-
CAM50_RS09565 (CAM50_0010055)	-	1923030..1923713 (-)	684	WP_000775497.1	hypothetical protein	-
CAM50_RS09570 (CAM50_0010060)	-	1923849..1924919 (-)	1071	WP_000102658.1	patatin-like phospholipase family protein	-
CAM50_RS09575 (CAM50_0010065)	-	1924916..1925821 (-)	906	WP_000203545.1	diguanylate cyclase regulator RdcB family protein	-

Sequence

Protein

Download Length: 158 a.a. Molecular weight: 17688.29 Da Isoelectric Point: 7.2020

                                >NTDB_id=273426 CAM50_RS09540 WP_001186192.1 1920510..1920986(-) (radC) [Escherichia coli O157:H7 strain FWSEC0004]

MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT

INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide

Download Length: 477 bp

                                >NTDB_id=273426 CAM50_RS09540 WP_001186192.1 1920510..1920986(-) (radC) [Escherichia coli O157:H7 strain FWSEC0004]

ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA

CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC

TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC

ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA

CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG

TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A0H3JIA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radC	Haemophilus influenzae Rd KW20	54.867	71.519	0.392

Detailed information NTG0273426