Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   CCU03_RS22855 Genome accession   NZ_CP031912
Coordinates   4522415..4523020 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O111:NM strain FWSEC0005     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4517415..4528020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCU03_RS22835 (CCU03_024005) aes 4517452..4518411 (+) 960 WP_000801832.1 acetyl esterase -
  CCU03_RS22840 (CCU03_024010) hemH 4518408..4519370 (-) 963 WP_001250125.1 ferrochelatase -
  CCU03_RS22845 (CCU03_024015) adk 4519606..4520250 (-) 645 WP_001220233.1 adenylate kinase -
  CCU03_RS22850 (CCU03_024025) htpG 4520431..4522305 (-) 1875 WP_000678194.1 molecular chaperone HtpG -
  CCU03_RS22855 (CCU03_024030) recR 4522415..4523020 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  CCU03_RS22860 (CCU03_024035) ybaB 4523020..4523349 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  CCU03_RS22865 (CCU03_024040) dnaX 4523402..4525333 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  CCU03_RS22870 (CCU03_024045) apt 4525462..4526013 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  CCU03_RS22875 (CCU03_024055) ybaN 4526166..4526543 (-) 378 WP_001188905.1 DUF454 family protein -
  CCU03_RS22880 (CCU03_024060) priC 4526613..4527140 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  CCU03_RS22885 (CCU03_024065) rsmS 4527154..4527315 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=273375 CCU03_RS22855 WP_001195025.1 4522415..4523020(-) (recR) [Escherichia coli O111:NM strain FWSEC0005]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=273375 CCU03_RS22855 WP_001195025.1 4522415..4523020(-) (recR) [Escherichia coli O111:NM strain FWSEC0005]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443