Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CCU03_RS20275 Genome accession   NZ_CP031912
Coordinates   3970691..3971275 (-) Length   194 a.a.
NCBI ID   WP_077825616.1    Uniprot ID   -
Organism   Escherichia coli O111:NM strain FWSEC0005     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3965691..3976275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCU03_RS20260 (CCU03_021270) helD 3965933..3967987 (-) 2055 WP_001297106.1 DNA helicase IV -
  CCU03_RS20265 (CCU03_021275) yccF 3968110..3968556 (+) 447 WP_001261235.1 YccF domain-containing protein -
  CCU03_RS20270 (CCU03_021280) yccS 3968566..3970728 (+) 2163 WP_000875023.1 YccS family putative transporter -
  CCU03_RS20275 (CCU03_021285) sxy/tfoX 3970691..3971275 (-) 585 WP_077825616.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CCU03_RS20280 (CCU03_021290) sulA 3971539..3972048 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CCU03_RS20285 (CCU03_021300) ompA 3972405..3973445 (+) 1041 WP_000750416.1 porin OmpA -
  CCU03_RS20290 (CCU03_021305) matP 3973521..3973973 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CCU03_RS20295 (CCU03_021310) ycbZ 3974159..3975919 (+) 1761 WP_000156528.1 Lon protease family protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22258.82 Da        Isoelectric Point: 8.4565

>NTDB_id=273368 CCU03_RS20275 WP_077825616.1 3970691..3971275(-) (sxy/tfoX) [Escherichia coli O111:NM strain FWSEC0005]
MATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLNYYRVDESLWRNQLKL
VRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQNSLVTEKILFMLEGAI
IGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=273368 CCU03_RS20275 WP_077825616.1 3970691..3971275(-) (sxy/tfoX) [Escherichia coli O111:NM strain FWSEC0005]
CTGGCAACGTTGGGCACAATTGAATACCGATCATTGTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGAT
GGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTGAGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGA
CATATAAAAAGTGTGGCCGATCCGTTACCCTCAATTACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTG
GTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCTGAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTT
GCCCAATATGTCTTTTCATCTGGAAGCGATTCTCGGGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGG
CAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAACAGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATT
ATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACGCCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACA
GGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(101-179)

TfoX N-terminal domain (TfoX_N)

(2-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.485

100

0.995

Multiple sequence alignment