Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CCU03_RS19205 Genome accession   NZ_CP031912
Coordinates   3799734..3800210 (-) Length   158 a.a.
NCBI ID   WP_001345397.1    Uniprot ID   -
Organism   Escherichia coli O111:NM strain FWSEC0005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3794734..3805210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCU03_RS19165 (CCU03_020140) ghrA 3795459..3796397 (-) 939 WP_000351317.1 glyoxylate/hydroxypyruvate reductase GhrA -
  CCU03_RS19175 (CCU03_020150) - 3796868..3797710 (-) 843 WP_001280481.1 DUF4942 domain-containing protein -
  CCU03_RS19180 (CCU03_020155) - 3797795..3797992 (-) 198 WP_000839282.1 DUF957 domain-containing protein -
  CCU03_RS19185 (CCU03_020160) - 3798004..3798495 (-) 492 WP_000976857.1 DUF5983 family protein -
  CCU03_RS19190 (CCU03_020165) - 3798492..3798866 (-) 375 WP_000854914.1 TA system toxin CbtA family protein -
  CCU03_RS19195 (CCU03_020170) - 3798913..3799287 (-) 375 WP_001280954.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CCU03_RS19200 (CCU03_020175) - 3799450..3799671 (-) 222 WP_001220314.1 DUF987 domain-containing protein -
  CCU03_RS19205 (CCU03_020180) radC 3799734..3800210 (-) 477 WP_001345397.1 RadC family protein Machinery gene
  CCU03_RS19210 (CCU03_020185) - 3800226..3800711 (-) 486 WP_000214398.1 antirestriction protein -
  CCU03_RS19215 (CCU03_020190) - 3800802..3801620 (-) 819 WP_001234682.1 DUF932 domain-containing protein -
  CCU03_RS19225 (CCU03_020205) - 3801960..3802280 (-) 321 Protein_3751 hypothetical protein -
  CCU03_RS19230 (CCU03_020210) - 3802347..3803560 (+) 1214 WP_162829202.1 IS3-like element IS1203 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17703.30 Da        Isoelectric Point: 6.9242

>NTDB_id=273367 CCU03_RS19205 WP_001345397.1 3799734..3800210(-) (radC) [Escherichia coli O111:NM strain FWSEC0005]
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRTAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=273367 CCU03_RS19205 WP_001345397.1 3799734..3800210(-) (radC) [Escherichia coli O111:NM strain FWSEC0005]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTACGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.846

74.051

0.399