Detailed information NTG0273355

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: CCU03_RS13330
• Genome accession: NZ_CP031912
• Coordinates: 2695735..2696211 (-)
• Length: 158 a.a.
• NCBI ID: WP_001186773.1
• Uniprot ID: -
• Organism: Escherichia coli O111:NM strain FWSEC0005
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2690735..2701211

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CCU03_RS13280 (CCU03_013980)	sbmC	2691221..2691694 (+)	474	WP_001105393.1	DNA gyrase inhibitor SbmC	-
CCU03_RS13285 (CCU03_013985)	yeeA	2691892..2692951 (+)	1060	Protein_2585	FUSC family protein	-
CCU03_RS13290 (CCU03_013990)	tmaR	2693123..2693452 (+)	330	WP_000450409.1	DUF496 family protein	-
CCU03_RS13295 (CCU03_013995)	-	2693553..2693735 (-)	183	WP_001016348.1	EutP/PduV family microcompartment system protein	-
CCU03_RS13300 (CCU03_014000)	-	2693789..2693935 (+)	147	Protein_2588	transposase domain-containing protein	-
CCU03_RS13305 (CCU03_014005)	-	2694224..2694304 (-)	81	Protein_2589	hypothetical protein	-
CCU03_RS13310 (CCU03_014010)	yeeW	2694350..2694544 (-)	195	WP_000988599.1	DUF5983 family protein	-
CCU03_RS13315 (CCU03_014015)	cbtA	2694541..2694914 (-)	374	Protein_2591	type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA	-
CCU03_RS13320 (CCU03_014020)	cbeA	2695003..2695371 (-)	369	WP_001285585.1	type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA	-
CCU03_RS13325 (CCU03_014025)	yeeT	2695445..2695666 (-)	222	WP_000692345.1	DUF987 domain-containing protein	-
CCU03_RS13330 (CCU03_014030)	radC	2695735..2696211 (-)	477	WP_001186773.1	RadC family protein	Machinery gene
CCU03_RS13335 (CCU03_014035)	-	2696227..2696712 (-)	486	WP_086730282.1	antirestriction protein	-
CCU03_RS13340 (CCU03_014040)	-	2696803..2697624 (-)	822	WP_136733970.1	DUF932 domain-containing protein	-
CCU03_RS13350 (CCU03_014050)	-	2697845..2698255 (-)	411	WP_000846711.1	hypothetical protein	-
CCU03_RS13355 (CCU03_014055)	-	2698271..2698954 (-)	684	WP_000775497.1	hypothetical protein	-
CCU03_RS13360 (CCU03_014060)	-	2699090..2699818 (-)	729	Protein_2599	patatin-like phospholipase family protein	-
CCU03_RS13370 (CCU03_014070)	-	2699947..2700219 (+)	273	Protein_2600	integrase core domain-containing protein	-
CCU03_RS13375	-	2700262..2700477 (-)	216	Protein_2601	TonB-dependent receptor	-

Sequence

Protein

• Length: 158 a.a.
• Molecular weight: 17688.29 Da
• Isoelectric Point: 7.2020

>NTDB_id=273355 CCU03_RS13330 WP_001186773.1 2695735..2696211(-) (radC) [Escherichia coli O111:NM strain FWSEC0005]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide

• Length: 477 bp

>NTDB_id=273355 CCU03_RS13330 WP_001186773.1 2695735..2696211(-) (radC) [Escherichia coli O111:NM strain FWSEC0005]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (38-157)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	54.867	71.519	0.392