Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CCU03_RS09275 Genome accession   NZ_CP031912
Coordinates   1899307..1899822 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli O111:NM strain FWSEC0005     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1894307..1904822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCU03_RS09230 (CCU03_009765) csrA 1895028..1895213 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CCU03_RS09260 (CCU03_009795) yqaB 1896537..1897103 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CCU03_RS09265 (CCU03_009800) yqaA 1897100..1897528 (+) 429 WP_044861536.1 YqaA family protein -
  CCU03_RS09270 (CCU03_009805) gshA 1897601..1899157 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  CCU03_RS09275 (CCU03_009810) luxS 1899307..1899822 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  CCU03_RS09280 (CCU03_009815) emrB 1899886..1901424 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CCU03_RS09285 (CCU03_009820) emrA 1901441..1902613 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CCU03_RS09290 (CCU03_009825) emrR 1902740..1903270 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CCU03_RS09295 (CCU03_009830) ygaH 1903361..1903696 (-) 336 WP_000119771.1 L-valine transporter subunit YgaH -
  CCU03_RS09300 (CCU03_009835) ygaZ 1903686..1904423 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=273344 CCU03_RS09275 WP_001130207.1 1899307..1899822(+) (luxS) [Escherichia coli O111:NM strain FWSEC0005]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=273344 CCU03_RS09275 WP_001130207.1 1899307..1899822(+) (luxS) [Escherichia coli O111:NM strain FWSEC0005]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment