Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   B9X35_RS20720 Genome accession   NZ_CP031910
Coordinates   4021156..4021761 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O121:H19 strain FWSEC0006     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4016156..4026761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9X35_RS20695 (B9X35_021645) aes 4016193..4017152 (+) 960 WP_000801843.1 acetyl esterase -
  B9X35_RS20700 (B9X35_021650) hemH 4017149..4018111 (-) 963 WP_001250088.1 ferrochelatase -
  B9X35_RS20710 (B9X35_021655) adk 4018347..4018991 (-) 645 WP_001220233.1 adenylate kinase -
  B9X35_RS20715 (B9X35_021665) htpG 4019172..4021046 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  B9X35_RS20720 (B9X35_021670) recR 4021156..4021761 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  B9X35_RS20725 (B9X35_021675) ybaB 4021761..4022090 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  B9X35_RS20730 (B9X35_021680) dnaX 4022143..4024074 (-) 1932 WP_000122007.1 DNA polymerase III subunit gamma/tau -
  B9X35_RS20735 (B9X35_021685) apt 4024203..4024754 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  B9X35_RS20740 (B9X35_021695) ybaN 4024907..4025284 (-) 378 WP_001188905.1 DUF454 family protein -
  B9X35_RS20745 (B9X35_021700) priC 4025354..4025881 (+) 528 WP_000844871.1 primosomal replication protein N'' -
  B9X35_RS20750 (B9X35_021705) rsmS 4025895..4026056 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  B9X35_RS28790 - 4026109..4026207 (-) 99 Protein_4038 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=273287 B9X35_RS20720 WP_001195025.1 4021156..4021761(-) (recR) [Escherichia coli O121:H19 strain FWSEC0006]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=273287 B9X35_RS20720 WP_001195025.1 4021156..4021761(-) (recR) [Escherichia coli O121:H19 strain FWSEC0006]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTTATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443