Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   B9X35_RS18135 Genome accession   NZ_CP031910
Coordinates   3468643..3469272 (-) Length   209 a.a.
NCBI ID   WP_000841914.1    Uniprot ID   -
Organism   Escherichia coli O121:H19 strain FWSEC0006     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3463643..3474272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9X35_RS18120 (B9X35_018925) helD 3463885..3465939 (-) 2055 WP_001295354.1 DNA helicase IV -
  B9X35_RS18125 (B9X35_018930) yccF 3466062..3466508 (+) 447 WP_001261235.1 YccF domain-containing protein -
  B9X35_RS18130 (B9X35_018935) yccS 3466518..3468680 (+) 2163 WP_000875061.1 YccS family putative transporter -
  B9X35_RS18135 (B9X35_018940) sxy/tfoX 3468643..3469272 (-) 630 WP_000841914.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  B9X35_RS18140 (B9X35_018945) sulA 3469491..3470000 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  B9X35_RS18145 (B9X35_018955) ompA 3470357..3471409 (+) 1053 WP_000750419.1 porin OmpA -
  B9X35_RS18150 (B9X35_018960) matP 3471484..3471936 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  B9X35_RS18155 (B9X35_018965) ycbZ 3472122..3473882 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24130.97 Da        Isoelectric Point: 9.2180

>NTDB_id=273280 B9X35_RS18135 WP_000841914.1 3468643..3469272(-) (sxy/tfoX) [Escherichia coli O121:H19 strain FWSEC0006]
MKSPSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=273280 B9X35_RS18135 WP_000841914.1 3468643..3469272(-) (sxy/tfoX) [Escherichia coli O121:H19 strain FWSEC0006]
ATGAAAAGCCCCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995