Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   B9X35_RS06055 Genome accession   NZ_CP031910
Coordinates   1206562..1207077 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli O121:H19 strain FWSEC0006     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1201562..1212077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9X35_RS06010 (B9X35_006335) csrA 1202149..1202334 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  B9X35_RS06040 (B9X35_006365) yqaB 1203792..1204358 (+) 567 WP_000273301.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  B9X35_RS06045 (B9X35_006370) yqaA 1204355..1204783 (+) 429 WP_001287454.1 YqaA family protein -
  B9X35_RS06050 (B9X35_006375) gshA 1204856..1206412 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  B9X35_RS06055 (B9X35_006380) luxS 1206562..1207077 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  B9X35_RS06060 (B9X35_006385) emrB 1207141..1208679 (-) 1539 WP_001370184.1 multidrug efflux MFS transporter permease subunit EmrB -
  B9X35_RS06065 (B9X35_006390) emrA 1208696..1209868 (-) 1173 WP_001370257.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  B9X35_RS06070 (B9X35_006395) emrR 1209995..1210525 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  B9X35_RS06075 (B9X35_006400) ygaH 1210616..1210951 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  B9X35_RS06080 (B9X35_006405) ygaZ 1210941..1211678 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=273258 B9X35_RS06055 WP_001130211.1 1206562..1207077(+) (luxS) [Escherichia coli O121:H19 strain FWSEC0006]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=273258 B9X35_RS06055 WP_001130211.1 1206562..1207077(+) (luxS) [Escherichia coli O121:H19 strain FWSEC0006]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731