Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   B9X35_RS03605 Genome accession   NZ_CP031910
Coordinates   721323..721799 (+) Length   158 a.a.
NCBI ID   WP_001186728.1    Uniprot ID   -
Organism   Escherichia coli O121:H19 strain FWSEC0006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 716323..726799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9X35_RS03570 (B9X35_003800) - 716635..717045 (+) 411 WP_000848829.1 hypothetical protein -
  B9X35_RS03580 (B9X35_003810) - 717265..717645 (+) 381 Protein_685 DUF932 domain-containing protein -
  B9X35_RS03585 (B9X35_003815) - 718158..719936 (+) 1779 WP_001243192.1 reverse transcriptase/maturase family protein -
  B9X35_RS03590 (B9X35_003820) - 720055..720495 (+) 441 Protein_687 DUF932 domain-containing protein -
  B9X35_RS03595 (B9X35_003825) - 720495..720740 (+) 246 WP_001164974.1 hypothetical protein -
  B9X35_RS03600 (B9X35_003830) - 720834..721307 (+) 474 WP_000855068.1 antirestriction protein -
  B9X35_RS03605 (B9X35_003835) radC 721323..721799 (+) 477 WP_001186728.1 RadC family protein Machinery gene
  B9X35_RS03610 (B9X35_003840) - 721862..722083 (+) 222 WP_000692312.1 DUF987 domain-containing protein -
  B9X35_RS03615 (B9X35_003845) - 722159..722527 (+) 369 WP_001443392.1 type IV toxin-antitoxin system YeeU family antitoxin -
  B9X35_RS03620 (B9X35_003850) - 722616..722996 (+) 381 WP_000854687.1 TA system toxin CbtA family protein -
  B9X35_RS03625 (B9X35_003855) - 722993..723481 (+) 489 WP_001054228.1 DUF5983 family protein -
  B9X35_RS03630 (B9X35_003860) - 723501..723698 (+) 198 WP_000772026.1 DUF957 domain-containing protein -
  B9X35_RS03635 (B9X35_003865) - 723783..724628 (+) 846 WP_001274557.1 DUF4942 domain-containing protein -
  B9X35_RS03645 (B9X35_003875) mug 724928..725434 (+) 507 WP_000228937.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17674.35 Da        Isoelectric Point: 7.2020

>NTDB_id=273247 B9X35_RS03605 WP_001186728.1 721323..721799(+) (radC) [Escherichia coli O121:H19 strain FWSEC0006]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLLTERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=273247 B9X35_RS03605 WP_001186728.1 721323..721799(+) (radC) [Escherichia coli O121:H19 strain FWSEC0006]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGAGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGTTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATTAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTCTCACCGAACGTCTGGTACAGGCACTGGCCCTGG
TTGACATCCGGGTGCCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.982

71.519

0.386