Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CCU04_RS25130 Genome accession   NZ_CP031908
Coordinates   4900065..4900541 (+) Length   158 a.a.
NCBI ID   WP_001186727.1    Uniprot ID   -
Organism   Escherichia coli O103:H2 strain FWSEC0007     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4895065..4905541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCU04_RS25100 (CCU04_026400) - 4895232..4897748 (+) 2517 WP_001315618.1 hypothetical protein -
  CCU04_RS25105 (CCU04_026405) - 4897824..4898279 (+) 456 WP_000581504.1 IrmA family protein -
  CCU04_RS25110 (CCU04_026410) - 4898358..4898591 (+) 234 WP_001119729.1 DUF905 family protein -
  CCU04_RS25120 (CCU04_026420) - 4898691..4899509 (+) 819 WP_001234620.1 DUF932 domain-containing protein -
  CCU04_RS25125 (CCU04_026425) - 4899564..4900049 (+) 486 WP_000849570.1 antirestriction protein -
  CCU04_RS25130 (CCU04_026430) radC 4900065..4900541 (+) 477 WP_001186727.1 RadC family protein Machinery gene
  CCU04_RS25135 (CCU04_026435) - 4900604..4900825 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  CCU04_RS25140 (CCU04_026440) - 4900988..4901356 (+) 369 WP_001339471.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CCU04_RS25145 (CCU04_026445) - 4901446..4901823 (+) 378 WP_000854748.1 TA system toxin CbtA family protein -
  CCU04_RS25150 (CCU04_026450) - 4901820..4902308 (+) 489 WP_000761721.1 DUF5983 family protein -
  CCU04_RS25155 (CCU04_026455) - 4902320..4902517 (+) 198 WP_000839281.1 DUF957 domain-containing protein -
  CCU04_RS25160 (CCU04_026460) - 4902614..4903186 (+) 573 WP_001290246.1 DUF4942 domain-containing protein -
  CCU04_RS28850 - 4903561..4903675 (+) 115 Protein_4862 integrase -
  CCU04_RS25165 (CCU04_026470) cadC 4903935..4905473 (+) 1539 WP_001187182.1 lysine decarboxylation/transport transcriptional activator CadC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17646.30 Da        Isoelectric Point: 7.2020

>NTDB_id=273215 CCU04_RS25130 WP_001186727.1 4900065..4900541(+) (radC) [Escherichia coli O103:H2 strain FWSEC0007]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=273215 CCU04_RS25130 WP_001186727.1 4900065..4900541(+) (radC) [Escherichia coli O103:H2 strain FWSEC0007]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399