Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   CCU04_RS21140 Genome accession   NZ_CP031908
Coordinates   4062849..4063454 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O103:H2 strain FWSEC0007     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4057849..4068454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCU04_RS21115 (CCU04_022170) aes 4057886..4058845 (+) 960 WP_000801832.1 acetyl esterase -
  CCU04_RS21120 (CCU04_022175) hemH 4058842..4059804 (-) 963 WP_001250096.1 ferrochelatase -
  CCU04_RS21130 (CCU04_022180) adk 4060040..4060684 (-) 645 WP_001220233.1 adenylate kinase -
  CCU04_RS21135 (CCU04_022190) htpG 4060865..4062739 (-) 1875 WP_000678194.1 molecular chaperone HtpG -
  CCU04_RS21140 (CCU04_022195) recR 4062849..4063454 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  CCU04_RS21145 (CCU04_022200) ybaB 4063454..4063783 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  CCU04_RS21150 (CCU04_022205) dnaX 4063836..4065767 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  CCU04_RS21155 (CCU04_022210) apt 4065896..4066447 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  CCU04_RS21160 (CCU04_022220) ybaN 4066600..4066977 (-) 378 WP_001188905.1 DUF454 family protein -
  CCU04_RS21165 (CCU04_022225) priC 4067047..4067574 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  CCU04_RS21170 (CCU04_022230) rsmS 4067588..4067749 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  CCU04_RS28710 - 4067802..4067900 (-) 99 Protein_4084 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=273205 CCU04_RS21140 WP_001195025.1 4062849..4063454(-) (recR) [Escherichia coli O103:H2 strain FWSEC0007]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=273205 CCU04_RS21140 WP_001195025.1 4062849..4063454(-) (recR) [Escherichia coli O103:H2 strain FWSEC0007]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443