Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CCU04_RS09650 Genome accession   NZ_CP031908
Coordinates   1969829..1970305 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli O103:H2 strain FWSEC0007     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1964829..1975305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCU04_RS09600 (CCU04_010140) sbmC 1965322..1965795 (+) 474 WP_001105383.1 DNA gyrase inhibitor SbmC -
  CCU04_RS09605 (CCU04_010145) yeeA 1965993..1967051 (+) 1059 WP_001200891.1 FUSC family protein -
  CCU04_RS09610 (CCU04_010150) tmaR 1967223..1967552 (+) 330 WP_000450409.1 DUF496 family protein -
  CCU04_RS09615 (CCU04_010155) - 1967653..1967835 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CCU04_RS09620 (CCU04_010160) - 1967889..1968035 (+) 147 Protein_1861 transposase domain-containing protein -
  CCU04_RS09625 (CCU04_010165) - 1968324..1968404 (-) 81 Protein_1862 hypothetical protein -
  CCU04_RS09630 (CCU04_010170) yeeW 1968450..1968644 (-) 195 WP_000988599.1 DUF5983 family protein -
  CCU04_RS09635 (CCU04_010175) cbtA 1968641..1969014 (-) 374 Protein_1864 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CCU04_RS09640 (CCU04_010180) cbeA 1969103..1969471 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CCU04_RS09645 (CCU04_010185) yeeT 1969545..1969766 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  CCU04_RS09650 (CCU04_010190) radC 1969829..1970305 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  CCU04_RS09655 (CCU04_010195) - 1970321..1970800 (-) 480 WP_000860060.1 antirestriction protein -
  CCU04_RS09660 (CCU04_010200) - 1970882..1971703 (-) 822 WP_001234549.1 DUF932 domain-containing protein -
  CCU04_RS09670 (CCU04_010210) - 1971924..1972334 (-) 411 WP_000846713.1 hypothetical protein -
  CCU04_RS09675 (CCU04_010215) - 1972350..1973033 (-) 684 WP_000775500.1 hypothetical protein -
  CCU04_RS09680 (CCU04_010220) - 1973169..1974239 (-) 1071 WP_000102664.1 patatin-like phospholipase family protein -
  CCU04_RS09685 (CCU04_010225) - 1974236..1975141 (-) 906 WP_000625257.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=273185 CCU04_RS09650 WP_001186773.1 1969829..1970305(-) (radC) [Escherichia coli O103:H2 strain FWSEC0007]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=273185 CCU04_RS09650 WP_001186773.1 1969829..1970305(-) (radC) [Escherichia coli O103:H2 strain FWSEC0007]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392