Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CCU04_RS06140 Genome accession   NZ_CP031908
Coordinates   1243238..1243753 (+) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli O103:H2 strain FWSEC0007     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1238238..1248753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCU04_RS06095 (CCU04_006440) csrA 1238825..1239010 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CCU04_RS06125 (CCU04_006470) yqaB 1240468..1241034 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CCU04_RS06130 (CCU04_006475) yqaA 1241031..1241459 (+) 429 WP_001287454.1 YqaA family protein -
  CCU04_RS06135 (CCU04_006480) gshA 1241532..1243088 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  CCU04_RS06140 (CCU04_006485) luxS 1243238..1243753 (+) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  CCU04_RS06145 (CCU04_006490) emrB 1243817..1245355 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CCU04_RS06150 (CCU04_006495) emrA 1245372..1246544 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CCU04_RS06155 (CCU04_006500) emrR 1246671..1247201 (-) 531 WP_000378435.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CCU04_RS06160 (CCU04_006505) ygaH 1247292..1247627 (-) 336 WP_000119754.1 L-valine transporter subunit YgaH -
  CCU04_RS06165 (CCU04_006510) ygaZ 1247617..1248354 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=273175 CCU04_RS06140 WP_001130210.1 1243238..1243753(+) (luxS) [Escherichia coli O103:H2 strain FWSEC0007]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=273175 CCU04_RS06140 WP_001130210.1 1243238..1243753(+) (luxS) [Escherichia coli O103:H2 strain FWSEC0007]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment