Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CCU04_RS04155 Genome accession   NZ_CP031908
Coordinates   836986..837462 (-) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli O103:H2 strain FWSEC0007     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 831986..842462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCU04_RS04125 (CCU04_004425) - 834347..834916 (-) 570 WP_001290252.1 DUF4942 domain-containing protein -
  CCU04_RS04130 (CCU04_004430) - 835013..835210 (-) 198 WP_000839281.1 DUF957 domain-containing protein -
  CCU04_RS04135 (CCU04_004435) - 835222..835710 (-) 489 WP_000777552.1 DUF5983 family protein -
  CCU04_RS04140 (CCU04_004440) - 835707..836081 (-) 375 WP_000854753.1 TA system toxin CbtA family protein -
  CCU04_RS04145 (CCU04_004445) - 836171..836539 (-) 369 WP_001280948.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CCU04_RS04150 (CCU04_004450) - 836702..836923 (-) 222 WP_000692311.1 DUF987 domain-containing protein -
  CCU04_RS04155 (CCU04_004455) radC 836986..837462 (-) 477 WP_001186726.1 RadC family protein Machinery gene
  CCU04_RS04160 (CCU04_004460) - 837478..837963 (-) 486 WP_000849571.1 antirestriction protein -
  CCU04_RS04165 (CCU04_004465) - 838018..838836 (-) 819 WP_001234620.1 DUF932 domain-containing protein -
  CCU04_RS04175 (CCU04_004475) - 838936..839169 (-) 234 WP_001119729.1 DUF905 family protein -
  CCU04_RS04180 (CCU04_004480) - 839248..839610 (-) 363 Protein_812 IrmA family protein -
  CCU04_RS04185 (CCU04_004485) - 839657..840870 (+) 1214 WP_162860179.1 IS3 family transposase -
  CCU04_RS28320 - 840912..841016 (-) 105 Protein_814 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=273168 CCU04_RS04155 WP_001186726.1 836986..837462(-) (radC) [Escherichia coli O103:H2 strain FWSEC0007]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=273168 CCU04_RS04155 WP_001186726.1 836986..837462(-) (radC) [Escherichia coli O103:H2 strain FWSEC0007]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAGCCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGTTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392