Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CCU04_RS03855 Genome accession   NZ_CP031908
Coordinates   789185..789661 (-) Length   158 a.a.
NCBI ID   WP_001368782.1    Uniprot ID   -
Organism   Escherichia coli O103:H2 strain FWSEC0007     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 784185..794661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCU04_RS03815 (CCU04_004115) gspL 784223..785401 (+) 1179 WP_000094966.1 type II secretion system protein GspL -
  CCU04_RS03820 (CCU04_004120) yghD 785403..785939 (+) 537 WP_000942788.1 GspM family type II secretion system protein YghD -
  CCU04_RS03825 (CCU04_004125) - 786282..787124 (-) 843 WP_001378387.1 DUF4942 domain-containing protein -
  CCU04_RS03830 (CCU04_004130) - 787209..787406 (-) 198 WP_000839243.1 DUF957 domain-containing protein -
  CCU04_RS03835 (CCU04_004135) - 787418..787906 (-) 489 WP_000761729.1 DUF5983 family protein -
  CCU04_RS03840 (CCU04_004140) - 787954..788280 (-) 327 WP_000854717.1 TA system toxin CbtA family protein -
  CCU04_RS03845 (CCU04_004145) - 788370..788738 (-) 369 WP_001285644.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CCU04_RS03850 (CCU04_004150) - 788901..789122 (-) 222 WP_000692319.1 DUF987 domain-containing protein -
  CCU04_RS03855 (CCU04_004155) radC 789185..789661 (-) 477 WP_001368782.1 RadC family protein Machinery gene
  CCU04_RS03860 (CCU04_004160) - 789677..790150 (-) 474 WP_001368734.1 antirestriction protein -
  CCU04_RS03865 (CCU04_004165) - 790244..790489 (-) 246 WP_001164975.1 hypothetical protein -
  CCU04_RS03870 (CCU04_004170) - 790489..791040 (-) 552 Protein_753 DUF932 domain-containing protein -
  CCU04_RS03885 (CCU04_004185) - 793812..793985 (+) 174 Protein_756 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17654.27 Da        Isoelectric Point: 6.9859

>NTDB_id=273167 CCU04_RS03855 WP_001368782.1 789185..789661(-) (radC) [Escherichia coli O103:H2 strain FWSEC0007]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=273167 CCU04_RS03855 WP_001368782.1 789185..789661(-) (radC) [Escherichia coli O103:H2 strain FWSEC0007]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392