Detailed information NTG0273093

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CAX06_RS05545
• Genome accession: NZ_CP031906
• Coordinates: 1133100..1134092 (+)
• Length: 330 a.a.
• NCBI ID: WP_079261273.1
• Uniprot ID: -
• Organism: Escherichia coli O91:H21 strain FWSEC0008
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1128100..1139092

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CAX06_RS05515 (CAX06_005845)	ispD	1128161..1128871 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CAX06_RS05520 (CAX06_005850)	ispF	1128871..1129350 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CAX06_RS05525 (CAX06_005855)	truD	1129347..1130396 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
CAX06_RS05530 (CAX06_005860)	surE	1130377..1131138 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CAX06_RS05535 (CAX06_005865)	pcm	1131132..1131758 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CAX06_RS05540 (CAX06_005870)	nlpD	1131943..1133037 (+)	1095	WP_306218436.1	murein hydrolase activator NlpD	-
CAX06_RS05545 (CAX06_005875)	rpoS	1133100..1134092 (+)	993	WP_079261273.1	RNA polymerase sigma factor RpoS	Regulator
CAX06_RS05550 (CAX06_005880)	-	1134213..1134620 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
CAX06_RS05555 (CAX06_005885)	-	1134767..1135360 (+)	594	WP_000767708.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CAX06_RS05560 (CAX06_005890)	-	1135360..1136787 (+)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CAX06_RS05565 (CAX06_005895)	-	1136798..1137034 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CAX06_RS05570 (CAX06_005900)	ygbN	1137073..1138437 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37956.80 Da
• Isoelectric Point: 4.5597

>NTDB_id=273093 CAX06_RS05545 WP_079261273.1 1133100..1134092(+) (rpoS) [Escherichia coli O91:H21 strain FWSEC0008]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKEPNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=273093 CAX06_RS05545 WP_079261273.1 1133100..1134092(+) (rpoS) [Escherichia coli O91:H21 strain FWSEC0008]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCCGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (176-248)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	97.879	0.712