Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   VEIS_RS03895 Genome accession   NC_008786
Coordinates   881923..883302 (+) Length   459 a.a.
NCBI ID   WP_011808591.1    Uniprot ID   A1WG20
Organism   Verminephrobacter eiseniae EF01-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 876923..888302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEIS_RS03870 (Veis_0792) - 876934..877818 (-) 885 WP_011808586.1 transporter substrate-binding domain-containing protein -
  VEIS_RS03875 (Veis_0793) - 878091..879386 (+) 1296 WP_041949793.1 FAD-binding oxidoreductase -
  VEIS_RS03880 (Veis_0794) - 879398..880159 (+) 762 WP_086014386.1 aspartate/glutamate racemase family protein -
  VEIS_RS03885 (Veis_0795) - 880144..880842 (+) 699 WP_011808589.1 GntR family transcriptional regulator -
  VEIS_RS03890 (Veis_0796) - 880984..881817 (-) 834 WP_011808590.1 aldolase/citrate lyase family protein -
  VEIS_RS03895 (Veis_0797) radA 881923..883302 (+) 1380 WP_011808591.1 DNA repair protein RadA Machinery gene
  VEIS_RS03900 (Veis_0798) - 883337..884404 (-) 1068 WP_011808592.1 tagatose 1,6-diphosphate aldolase -
  VEIS_RS03905 (Veis_0799) - 884412..885338 (-) 927 WP_232287837.1 PfkB family carbohydrate kinase -
  VEIS_RS03910 (Veis_0800) - 885346..886419 (-) 1074 WP_011808594.1 ABC transporter ATP-binding protein -
  VEIS_RS03915 (Veis_0801) - 886435..887409 (-) 975 WP_011808595.1 zinc-binding dehydrogenase -
  VEIS_RS03920 (Veis_0802) - 887422..888231 (-) 810 WP_011808596.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 48118.48 Da        Isoelectric Point: 7.2277

>NTDB_id=27309 VEIS_RS03895 WP_011808591.1 881923..883302(+) (radA) [Verminephrobacter eiseniae EF01-2]
MAKEKTIFTCTECGGASPRWLGKCPACGAWNTLIEALAETGPGTHRYSASRYAGLAQAQGVMPLSAIEASDVQRSPSGIG
ELDRVLGGGIVEGGVVLIGGDPGIGKSTLLLQALDALQRAGLPTLYVTGEESGAQVALRSRRLGLEHSQVNVLAEIQLEK
ILAAIDAMQPAVAVIDSIQTMYSEQLTSAPGSVAQVRECAAHLTRAAKASGVAIVLVGHVTKEGALAGPRVLEHMVDTVL
YFEGDTHSQFRLVRAIKNRFGAVNEIGVFAMTEKGLRGVSNPSAIFLSQHSEPVPGSCVMVTLEGSRPLLVEIQALVDSG
GPSPRRLSVGLDKDRLAMLLAVLHRHAGVACGDQDVFVNAVGGVRISEPAADLAVLLAIHSSLRGRALPRGFLAFGEVGL
AGEVRPAPRGQERLREAAKLGFCAAVLPRANAPKKPIEGLSIHPVERVEEALNVVRDLT

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=27309 VEIS_RS03895 WP_011808591.1 881923..883302(+) (radA) [Verminephrobacter eiseniae EF01-2]
ATGGCCAAAGAAAAAACCATTTTTACCTGCACCGAGTGCGGCGGCGCCAGCCCCCGCTGGCTGGGCAAATGCCCGGCCTG
CGGCGCCTGGAACACCTTGATCGAGGCGCTGGCCGAGACCGGGCCGGGCACGCACCGCTACAGCGCCTCCCGCTATGCCG
GCCTGGCGCAGGCGCAGGGCGTGATGCCGCTGTCGGCCATCGAAGCCAGCGATGTGCAGCGCAGCCCGAGCGGCATCGGC
GAGCTCGACCGCGTGCTGGGCGGTGGCATCGTCGAAGGCGGGGTGGTGCTGATCGGCGGCGACCCGGGCATAGGCAAGTC
CACCTTGCTGCTGCAAGCGCTCGATGCGCTGCAACGCGCCGGCTTGCCCACGCTGTATGTCACCGGCGAGGAAAGCGGCG
CCCAGGTGGCGCTGCGCTCGCGCCGCCTGGGGCTCGAACACAGCCAGGTCAATGTGCTGGCGGAAATCCAGTTGGAAAAG
ATTCTCGCCGCCATCGATGCCATGCAGCCGGCCGTGGCGGTGATCGACTCGATACAGACGATGTACTCCGAGCAACTCAC
CTCGGCGCCGGGTTCGGTGGCCCAGGTGCGCGAATGCGCGGCCCATCTGACGCGGGCGGCCAAGGCGAGCGGCGTGGCGA
TCGTGCTGGTGGGCCATGTCACCAAGGAGGGCGCGCTGGCCGGCCCGCGCGTGCTCGAACACATGGTGGACACCGTGCTG
TATTTCGAGGGCGACACCCACAGCCAGTTCAGGCTGGTGCGGGCGATCAAGAACCGCTTTGGCGCGGTCAACGAGATCGG
CGTGTTCGCGATGACCGAAAAGGGACTGCGGGGCGTGAGCAACCCCAGCGCGATTTTCCTGAGCCAGCACAGCGAGCCCG
TGCCGGGCAGTTGCGTGATGGTGACGCTGGAGGGCTCCCGGCCGCTGCTGGTCGAGATACAGGCGCTGGTCGACAGTGGC
GGGCCCAGCCCCCGGCGGCTGAGCGTGGGCCTGGACAAGGACCGCCTGGCCATGCTGCTGGCCGTGCTGCACCGCCACGC
GGGCGTGGCCTGCGGCGACCAGGACGTGTTCGTCAATGCCGTCGGCGGTGTGCGCATCAGCGAGCCGGCGGCCGACCTGG
CCGTGCTGCTGGCCATCCACTCCAGCCTGAGGGGCCGGGCGCTGCCGCGCGGCTTTCTGGCCTTTGGCGAGGTCGGGCTG
GCCGGCGAGGTGCGCCCCGCGCCGCGCGGGCAGGAGCGCCTCAGGGAAGCCGCCAAACTGGGCTTTTGCGCGGCGGTGCT
GCCCCGGGCGAATGCGCCGAAAAAGCCCATCGAGGGGCTGAGCATCCACCCGGTGGAGCGGGTGGAAGAGGCGCTGAACG
TGGTGCGCGATCTGACCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1WG20

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.231

99.129

0.488
  radA Streptococcus mitis NCTC 12261

44.371

98.693

0.438
  radA Streptococcus mitis SK321

44.371

98.693

0.438
  radA Streptococcus pneumoniae TIGR4

46.047

93.682

0.431
  radA Streptococcus pneumoniae D39

46.047

93.682

0.431
  radA Streptococcus pneumoniae Rx1

46.047

93.682

0.431
  radA Streptococcus pneumoniae R6

46.047

93.682

0.431

Multiple sequence alignment