Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CAX06_RS00340 Genome accession   NZ_CP031906
Coordinates   72000..72668 (+) Length   222 a.a.
NCBI ID   WP_001298959.1    Uniprot ID   Q31UY8
Organism   Escherichia coli O91:H21 strain FWSEC0008     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 67000..77668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAX06_RS00310 (CAX06_000340) yicC 67019..67882 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  CAX06_RS00315 (CAX06_000350) rph 68009..68725 (+) 717 WP_001247082.1 ribonuclease PH -
  CAX06_RS00320 (CAX06_000355) pyrE 68791..69432 (+) 642 WP_000806164.1 orotate phosphoribosyltransferase -
  CAX06_RS00325 (CAX06_000360) slmA 69469..70065 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CAX06_RS00330 (CAX06_000365) dut 70172..70630 (-) 459 WP_000976070.1 dUTP diphosphatase -
  CAX06_RS00335 (CAX06_000370) coaBC 70608..71828 (-) 1221 WP_000050115.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CAX06_RS00340 (CAX06_000375) radC 72000..72668 (+) 669 WP_001298959.1 DNA repair protein RadC Machinery gene
  CAX06_RS00345 (CAX06_000380) rpmB 72885..73121 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  CAX06_RS00350 (CAX06_000385) rpmG 73142..73309 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  CAX06_RS00355 (CAX06_000390) mutM 73407..74216 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CAX06_RS00360 (CAX06_000395) coaD 74255..74734 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  CAX06_RS00365 (CAX06_000400) waaA 74742..76019 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CAX06_RS00370 (CAX06_000405) rfaQ 76432..77490 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=273073 CAX06_RS00340 WP_001298959.1 72000..72668(+) (radC) [Escherichia coli O91:H21 strain FWSEC0008]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=273073 CAX06_RS00340 WP_001298959.1 72000..72668(+) (radC) [Escherichia coli O91:H21 strain FWSEC0008]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGACGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496