Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C5F71_RS08355 Genome accession   NZ_CP026881
Coordinates   1744505..1745872 (-) Length   455 a.a.
NCBI ID   WP_029292126.1    Uniprot ID   A0AAP6YGH3
Organism   Pseudomonas sp. LG1D9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1739505..1750872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5F71_RS08330 yjiA 1740484..1741443 (-) 960 WP_104910949.1 GTPase -
  C5F71_RS08340 - 1741594..1741791 (-) 198 WP_029292120.1 YbdD/YjiX family protein -
  C5F71_RS08345 - 1741807..1743873 (-) 2067 WP_029292122.1 carbon starvation CstA family protein -
  C5F71_RS08350 - 1744047..1744415 (+) 369 WP_104910950.1 PilZ domain-containing protein -
  C5F71_RS08355 radA 1744505..1745872 (-) 1368 WP_029292126.1 DNA repair protein RadA Machinery gene
  C5F71_RS08360 - 1745908..1746438 (-) 531 WP_029292128.1 ankyrin repeat domain-containing protein -
  C5F71_RS08365 - 1746576..1748117 (-) 1542 WP_092230543.1 catalase -
  C5F71_RS08370 mscL 1748404..1748820 (+) 417 WP_076963559.1 large-conductance mechanosensitive channel protein MscL -
  C5F71_RS08375 - 1748879..1749655 (-) 777 WP_104910951.1 ferredoxin--NADP reductase -
  C5F71_RS08380 - 1750084..1750794 (+) 711 WP_092230549.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48699.18 Da        Isoelectric Point: 6.8987

>NTDB_id=273057 C5F71_RS08355 WP_029292126.1 1744505..1745872(-) (radA) [Pseudomonas sp. LG1D9]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=273057 C5F71_RS08355 WP_029292126.1 1744505..1745872(-) (radA) [Pseudomonas sp. LG1D9]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAATGGGCGGGCCAGTGTGGCGAATG
CGGGGCGTGGAACACCCTCACTGAAACCATGATCGAAAGTGGCGGCGCCGCAGCGCCCACCGGTCGCGCAGGCTGGACCG
GCCAGCAAGCCCAGATCAAGACCCTGGCTGAAGTCAGCGTCGAAGAAATCCCGCGCTTTTCTACTGCTTCCGGCGAGCTT
GACCGGGTGCTCGGTGGCGGCCTGGTGGACGGCTCGGTGGTGTTGATCGGCGGCGATCCGGGGATCGGCAAATCGACCAT
CCTCCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCGGCCTTGTATGTCACCGGCGAAGAATCCCAGCAGCAAGTGG
CCATGCGCGCCCGTCGCCTGGGCCTGCCCCAGGACCAGTTGCGGGTCATGACCGAGACCTGTATCGAAAGCATCATCGCC
ACCGCCCGTGTGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACGATCTTCACCGAGCAGCTGCAATCGGCGCC
GGGTGGGGTGTCCCAGGTGCGGGAAAGCGCGGCGTTGCTGGTGCGCTATGCCAAGCAAAGCGGTACGGCGATTTTCCTGG
TGGGTCATGTCACCAAGGAAGGCGCGTTGGCCGGCCCGCGGGTGCTGGAGCATATGGTCGATACGGTGCTGTATTTCGAG
GGCGAGTCCGATGGGCGTCTGCGCCTGTTGCGCGCGGTGAAAAACCGTTTTGGTGCGGTCAACGAGCTGGGGGTGTTCGC
CATGACGGACCGGGGGCTCAAAGAAGTCTCCAACCCCTCGGCGATCTTTCTGACCCGCGCCCAGGAAGAAGTACCGGGCA
GCGTGGTAATGGCAACGTGGGAGGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCCCTGGTGGACGACAGCCACCTGGCC
AACCCGCGCCGCGTGACCCTGGGCCTGGATCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCATCGCCACGGCGGGAT
CCCGACCCATGACCAGGACGTGTTCCTCAACGTGGTCGGCGGTGTAAAGGTGCTGGAAACCGCGTCGGACCTGGCGTTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAATCGGCCGTTGCCCCATGACCTGCTGGTATTTGGTGAGGTGGGCTTGTCGGGC
GAAGTGCGTCCGGTGCCCAGCGGCCAGGAGCGTCTGAAGGAAGCGGCCAAGCATGGCTTCAAGCGTGCCATCGTGCCCAA
GGGCAATGCACCGAAGGAGGCGCCACCGGGGTTGCAGGTGATTGCGGTGACGCGTCTGGAACAGGCCCTGGACGCCTTGT
TCGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.497
  radA Streptococcus pneumoniae Rx1

46.739

100

0.473
  radA Streptococcus pneumoniae R6

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.739

100

0.473
  radA Streptococcus pneumoniae D39

46.739

100

0.473
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468

Multiple sequence alignment