Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   C8200_RS24115 Genome accession   NZ_CP031902
Coordinates   4785846..4786322 (+) Length   158 a.a.
NCBI ID   WP_001390304.1    Uniprot ID   -
Organism   Escherichia coli O104:H4 strain FWSEC0009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4780846..4791322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C8200_RS24085 (C8200_25315) - 4781353..4781832 (-) 480 Protein_4639 IS3 family transposase -
  C8200_RS24090 (C8200_25320) ltrA 4781916..4783424 (-) 1509 WP_001189118.1 group II intron reverse transcriptase/maturase -
  C8200_RS24100 (C8200_25330) - 4784097..4784836 (-) 740 Protein_4641 IS3 family transposase -
  C8200_RS27735 - 4784893..4785018 (+) 126 Protein_4642 DUF945 domain-containing protein -
  C8200_RS27740 - 4785018..4785191 (+) 174 WP_001183321.1 hypothetical protein -
  C8200_RS24110 (C8200_25340) - 4785357..4785830 (+) 474 WP_001387789.1 antirestriction protein -
  C8200_RS24115 (C8200_25345) radC 4785846..4786322 (+) 477 WP_001390304.1 RadC family protein Machinery gene
  C8200_RS24120 (C8200_25350) - 4786409..4786630 (+) 222 WP_000692350.1 DUF987 domain-containing protein -
  C8200_RS24125 (C8200_25355) cbeA 4786710..4787087 (+) 378 WP_001285620.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  C8200_RS24130 (C8200_25360) - 4787134..4787511 (+) 378 WP_001094430.1 TA system toxin CbtA family protein -
  C8200_RS24135 (C8200_25365) - 4787508..4787996 (+) 489 WP_000761715.1 DUF5983 family protein -
  C8200_RS24140 (C8200_25370) - 4788016..4788213 (+) 198 WP_000772029.1 DUF957 domain-containing protein -
  C8200_RS24145 (C8200_25375) - 4788298..4789140 (+) 843 WP_001290187.1 DUF4942 domain-containing protein -
  C8200_RS28525 - 4789515..4789629 (+) 115 Protein_4652 integrase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17671.30 Da        Isoelectric Point: 7.2020

>NTDB_id=273052 C8200_RS24115 WP_001390304.1 4785846..4786322(+) (radC) [Escherichia coli O104:H4 strain FWSEC0009]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVPPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=273052 C8200_RS24115 WP_001390304.1 4785846..4786322(+) (radC) [Escherichia coli O104:H4 strain FWSEC0009]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCCCCCCCAGCAAGGCAGACCGCCTTATCACTGAGCGTCTGGTACAGGCACTGGCCCTGG
TTGATATCCGGGTACCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399