Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C5F70_RS28665 Genome accession   NZ_CP026880
Coordinates   6168020..6169387 (+) Length   455 a.a.
NCBI ID   WP_017848272.1    Uniprot ID   A0A1D3K4F8
Organism   Pseudomonas sp. LH1G9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6163020..6174387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5F70_RS28640 - 6163119..6163829 (-) 711 WP_104904396.1 LuxR family transcriptional regulator -
  C5F70_RS28645 - 6164231..6165007 (+) 777 WP_046381980.1 ferredoxin--NADP reductase -
  C5F70_RS28650 mscL 6165053..6165469 (-) 417 WP_104904397.1 large-conductance mechanosensitive channel protein MscL -
  C5F70_RS28655 katB 6165757..6167298 (+) 1542 WP_104904398.1 catalase KatB -
  C5F70_RS28660 - 6167436..6167984 (+) 549 WP_104904399.1 ankyrin repeat domain-containing protein -
  C5F70_RS28665 radA 6168020..6169387 (+) 1368 WP_017848272.1 DNA repair protein RadA Machinery gene
  C5F70_RS28670 - 6169441..6169809 (-) 369 WP_104904400.1 PilZ domain-containing protein -
  C5F70_RS28675 - 6169985..6172051 (+) 2067 WP_017848270.1 carbon starvation CstA family protein -
  C5F70_RS28680 - 6172067..6172264 (+) 198 WP_017737420.1 YbdD/YjiX family protein -
  C5F70_RS28685 yjiA 6172421..6173380 (+) 960 WP_104904401.1 GTPase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48729.20 Da        Isoelectric Point: 6.8987

>NTDB_id=273044 C5F70_RS28665 WP_017848272.1 6168020..6169387(+) (radA) [Pseudomonas sp. LH1G9]
MAKAKRMYGCTECGATFPKWAGQCTECGAWNTLTETMIESGGAAAPSGRAGWTGQQAQIKTLAEVSVEEVPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=273044 C5F70_RS28665 WP_017848272.1 6168020..6169387(+) (radA) [Pseudomonas sp. LH1G9]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAGTGTACCGAGTG
CGGGGCGTGGAACACCCTCACCGAAACCATGATCGAAAGCGGCGGCGCCGCGGCCCCCAGCGGCCGTGCCGGCTGGACCG
GGCAACAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAGGAAGTCCCGCGTTTCTCCACCGCGTCCGGTGAGCTC
GACCGCGTGCTGGGCGGTGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGACCCCGGTATCGGCAAGTCGACCAT
CCTGTTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGTTGTACGTCACCGGCGAAGAATCCCAGCAACAAGTGG
CCATGCGCGCACGCCGCCTGGGCTTGCCCCAGGACCAACTGCGGGTGATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACTGCGCGGATCGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAACAACTGCAATCGGCCCC
GGGCGGCGTGTCCCAGGTGCGTGAGAGCGCGGCGCTGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATTTTCCTGG
TCGGTCACGTGACCAAGGAAGGCGCGCTGGCCGGGCCACGGGTGTTGGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGCGAGTCCGATGGCCGTTTGCGTTTGCTGCGCGCCGTGAAGAACCGCTTCGGCGCGGTGAACGAGCTGGGCGTATTCGC
CATGACCGACCGCGGGCTGAAAGAAGTCTCTAACCCCTCGGCGATTTTTCTGACCCGTGCCCAGGAAGAAGTCCCCGGTA
GTGTGGTGATGGCAACGTGGGAAGGCACCCGCCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGACGACAGCCATTTGGCC
AACCCGCGTCGAGTGACCCTGGGCCTGGACCAGAACCGCCTGGCGATGCTGCTCGCGGTACTCCACCGGCACGGCGGCAT
CCCGACCCATGACCAGGACGTGTTCCTTAACGTGGTGGGCGGGGTCAAGGTGCTGGAGACCGCGTCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCGCTGCCCCACGACCTGCTGGTGTTCGGCGAAGTCGGCCTGTCGGGC
GAAGTGCGCCCGGTGCCCAGCGGTCAGGAGCGTTTGAAGGAAGCGGCCAAACACGGCTTCAAGCGCGCGATCGTGCCCAA
GGGCAACGCGCCGAAGGAAGCGCCGCCGGGGTTGCAGGTGATTGCAGTGACGCGGCTGGAGCAGGCGTTGGATGCACTTT
TCGAGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(79-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D3K4F8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.497
  radA Streptococcus pneumoniae Rx1

46.957

100

0.475
  radA Streptococcus pneumoniae R6

46.957

100

0.475
  radA Streptococcus pneumoniae TIGR4

46.957

100

0.475
  radA Streptococcus pneumoniae D39

46.957

100

0.475
  radA Streptococcus mitis SK321

47.149

100

0.473
  radA Streptococcus mitis NCTC 12261

46.93

100

0.47

Multiple sequence alignment