Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   C8200_RS15990 Genome accession   NZ_CP031902
Coordinates   3147179..3147655 (-) Length   158 a.a.
NCBI ID   WP_001186756.1    Uniprot ID   A0A0H2VD88
Organism   Escherichia coli O104:H4 strain FWSEC0009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3142179..3152655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C8200_RS15950 (C8200_16755) ghrA 3142968..3143906 (-) 939 WP_000351313.1 glyoxylate/hydroxypyruvate reductase GhrA -
  C8200_RS15960 (C8200_16765) - 3144377..3145219 (-) 843 WP_001274560.1 DUF4942 domain-containing protein -
  C8200_RS15965 (C8200_16770) - 3145304..3145501 (-) 198 WP_000839270.1 DUF957 domain-containing protein -
  C8200_RS15970 (C8200_16775) - 3145513..3146004 (-) 492 WP_000976860.1 DUF5983 family protein -
  C8200_RS15975 (C8200_16780) - 3146001..3146375 (-) 375 WP_000771609.1 TA system toxin CbtA family protein -
  C8200_RS15980 (C8200_16785) cbeA 3146466..3146819 (-) 354 WP_001285568.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  C8200_RS15985 (C8200_16790) - 3146895..3147116 (-) 222 WP_000692357.1 DUF987 domain-containing protein -
  C8200_RS15990 (C8200_16795) radC 3147179..3147655 (-) 477 WP_001186756.1 RadC family protein Machinery gene
  C8200_RS15995 (C8200_16800) - 3147671..3148144 (-) 474 WP_000855049.1 antirestriction protein -
  C8200_RS16000 (C8200_16805) - 3148238..3148483 (-) 246 WP_001164966.1 hypothetical protein -
  C8200_RS16005 (C8200_16810) - 3148483..3149304 (-) 822 WP_001241709.1 DUF932 domain-containing protein -
  C8200_RS16015 (C8200_16820) - 3149525..3149935 (-) 411 WP_000846716.1 hypothetical protein -
  C8200_RS16020 (C8200_16825) - 3149951..3150634 (-) 684 WP_000775510.1 hypothetical protein -
  C8200_RS16025 (C8200_16830) - 3150768..3151838 (-) 1071 WP_000102638.1 patatin-like phospholipase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.31 Da        Isoelectric Point: 7.6149

>NTDB_id=273034 C8200_RS15990 WP_001186756.1 3147179..3147655(-) (radC) [Escherichia coli O104:H4 strain FWSEC0009]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNKLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=273034 C8200_RS15990 WP_001186756.1 3147179..3147655(-) (radC) [Escherichia coli O104:H4 strain FWSEC0009]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATAAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATTACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCTTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2VD88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399