Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   C8200_RS09775 Genome accession   NZ_CP031902
Coordinates   1982974..1983450 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli O104:H4 strain FWSEC0009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1977974..1988450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C8200_RS09725 (C8200_10235) - 1978603..1979583 (+) 981 WP_000399648.1 IS110-like element IS621 family transposase -
  C8200_RS09730 (C8200_10240) - 1979678..1980196 (+) 519 Protein_1871 hypothetical protein -
  C8200_RS09735 (C8200_10245) tmaR 1980368..1980697 (+) 330 WP_000450409.1 DUF496 family protein -
  C8200_RS09740 (C8200_10250) - 1980798..1980980 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  C8200_RS28025 - 1981100..1981180 (+) 81 WP_023441679.1 hypothetical protein -
  C8200_RS09750 (C8200_10260) - 1981469..1981549 (-) 81 Protein_1875 hypothetical protein -
  C8200_RS09755 (C8200_10265) yeeW 1981595..1981789 (-) 195 WP_000988600.1 DUF5983 family protein -
  C8200_RS09760 (C8200_10270) cbtA 1981786..1982159 (-) 374 Protein_1877 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  C8200_RS09765 (C8200_10275) cbeA 1982248..1982616 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  C8200_RS09770 (C8200_10280) yeeT 1982690..1982911 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  C8200_RS09775 (C8200_10285) radC 1982974..1983450 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  C8200_RS09780 (C8200_10290) - 1983466..1983945 (-) 480 WP_000860076.1 antirestriction protein -
  C8200_RS09785 (C8200_10295) - 1984027..1984848 (-) 822 WP_001234530.1 DUF932 domain-containing protein -
  C8200_RS09795 (C8200_10305) - 1985069..1985479 (-) 411 WP_000846713.1 hypothetical protein -
  C8200_RS09800 (C8200_10310) - 1985495..1986178 (-) 684 WP_000775500.1 hypothetical protein -
  C8200_RS09805 (C8200_10315) - 1986314..1987384 (-) 1071 WP_000102643.1 patatin-like phospholipase family protein -
  C8200_RS09810 (C8200_10320) - 1987381..1988286 (-) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=273022 C8200_RS09775 WP_001186773.1 1982974..1983450(-) (radC) [Escherichia coli O104:H4 strain FWSEC0009]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=273022 C8200_RS09775 WP_001186773.1 1982974..1983450(-) (radC) [Escherichia coli O104:H4 strain FWSEC0009]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTACTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392