Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C8J_RS05255 Genome accession   NC_009839
Coordinates   1022509..1023060 (+) Length   183 a.a.
NCBI ID   WP_002856575.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni 81116     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1017509..1028060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C8J_RS05220 (C8J_1004) - 1017699..1018125 (+) 427 Protein_996 GNAT family N-acetyltransferase -
  C8J_RS05225 (C8J_1005) - 1018189..1018808 (+) 620 Protein_997 NAD(P)H-dependent oxidoreductase -
  C8J_RS05230 (C8J_1007) - 1018808..1019413 (+) 606 WP_002853752.1 NAD(P)H-dependent oxidoreductase -
  C8J_RS05235 (C8J_1008) pgsA 1019538..1020074 (+) 537 WP_002812871.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  C8J_RS05240 (C8J_1009) rseP 1020071..1021177 (+) 1107 WP_002812870.1 RIP metalloprotease RseP -
  C8J_RS05245 (C8J_1010) - 1021170..1022036 (+) 867 WP_002812869.1 VirK family antimicrobial peptide resistance protein -
  C8J_RS05250 (C8J_1011) rpsF 1022123..1022500 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  C8J_RS05255 (C8J_1012) ssb 1022509..1023060 (+) 552 WP_002856575.1 single-stranded DNA-binding protein Machinery gene
  C8J_RS05260 (C8J_1013) rpsR 1023071..1023331 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  C8J_RS05265 (C8J_1014) lon 1023392..1025767 (-) 2376 WP_012006726.1 endopeptidase La -
  C8J_RS05270 (C8J_1015) - 1025784..1026431 (-) 648 WP_012006727.1 outer membrane protein assembly factor BamD -
  C8J_RS05275 (C8J_1016) fliW 1026592..1026981 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  C8J_RS05280 (C8J_1017) proC 1026981..1027712 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  C8J_RS05285 (C8J_1018) ctsT 1027709..1028011 (+) 303 WP_002877750.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20800.68 Da        Isoelectric Point: 5.0431

>NTDB_id=27299 C8J_RS05255 WP_002856575.1 1022509..1023060(+) (ssb) [Campylobacter jejuni subsp. jejuni 81116]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKTNPTPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=27299 C8J_RS05255 WP_002856575.1 1022509..1023060(+) (ssb) [Campylobacter jejuni subsp. jejuni 81116]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTAAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAACAAACCCTACTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372

Multiple sequence alignment