Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C4597_RS05140 Genome accession   NZ_CP026847
Coordinates   1048724..1050094 (+) Length   456 a.a.
NCBI ID   WP_104914619.1    Uniprot ID   -
Organism   Weissella koreensis strain WiKim0080     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1043724..1055094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4597_RS05110 (C4597_05110) - 1043901..1044098 (+) 198 WP_013989623.1 hypothetical protein -
  C4597_RS05115 (C4597_05115) - 1044209..1044829 (+) 621 WP_006844960.1 sugar O-acetyltransferase -
  C4597_RS05120 (C4597_05120) rpmF 1045017..1045190 (+) 174 WP_006844961.1 50S ribosomal protein L32 -
  C4597_RS05125 (C4597_05125) - 1045493..1047559 (+) 2067 WP_006844962.1 ATP-dependent Clp protease ATP-binding subunit -
  C4597_RS05130 (C4597_05130) - 1047721..1048017 (+) 297 WP_006844963.1 GNAT family N-acetyltransferase -
  C4597_RS05135 (C4597_05135) - 1048181..1048720 (+) 540 WP_006844964.1 dUTP diphosphatase -
  C4597_RS05140 (C4597_05140) radA 1048724..1050094 (+) 1371 WP_104914619.1 DNA repair protein RadA Machinery gene
  C4597_RS05145 (C4597_05145) - 1050126..1051238 (+) 1113 WP_006844966.1 PIN/TRAM domain-containing protein -
  C4597_RS05150 (C4597_05150) gltX 1051325..1052821 (+) 1497 WP_006844967.1 glutamate--tRNA ligase -
  C4597_RS05155 (C4597_05155) pheS 1053155..1054198 (+) 1044 WP_006844968.1 phenylalanine--tRNA ligase subunit alpha -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49926.26 Da        Isoelectric Point: 5.1714

>NTDB_id=272975 C4597_RS05140 WP_104914619.1 1048724..1050094(+) (radA) [Weissella koreensis strain WiKim0080]
MAKVKTHFVCSNCGDISQRYLGRCSNCGAWGTLVEEEIPSDKVDRKNRVNLAGQVAKVERLNQVELEEVPRVKTKIEEFN
RVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSGQLAGEGVVLYVSGEESAAQIKLRAERLGVEDDHNFLIYPETDMTHIRK
AIDDYGPEYVIIDSIQTMQQPDVNSAVGSVAQIRETTAELLQIAKTNGITIFVVGHVTKDGAIAGPKILEHMVDTVLYFE
GDNQRSYRLLRAVKNRFGSTNELGVFEMQQEGLTEVLNPSEMFLEERMEATTGSAVVVALEGSRPILVEVQALVTPTVFG
NAQRTSSGIDRNRVSLIMAVLEKRTNILLQNQDAYVRAAGGVKLNEPAVDLALAVAIASSYREAETRLTDAFVGEIGLTG
EIRRVPHIEERITEAQKLGFKRIFIPKNSLKEMLKIEGIKVITVQTLREALDLALS

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=272975 C4597_RS05140 WP_104914619.1 1048724..1050094(+) (radA) [Weissella koreensis strain WiKim0080]
ATGGCAAAAGTAAAGACCCATTTTGTTTGTTCTAACTGTGGTGATATTTCACAACGTTACTTGGGTCGTTGCAGTAACTG
TGGTGCTTGGGGAACTTTAGTAGAAGAAGAAATTCCAAGCGATAAAGTTGATCGTAAAAATCGAGTTAACTTAGCTGGAC
AAGTGGCGAAAGTAGAACGATTAAATCAGGTTGAATTAGAAGAGGTTCCTCGCGTTAAAACTAAAATTGAAGAATTTAAT
CGAGTTTTAGGTGGAGGGGTTGTTCCCGGCTCGATGGTCTTAATTGGTGGTGACCCAGGAATCGGTAAATCAACGTTATT
GTTGCAAGTTTCAGGCCAATTAGCTGGCGAAGGGGTTGTATTATACGTTTCTGGCGAAGAGAGTGCGGCTCAAATTAAGT
TACGGGCGGAACGTTTGGGCGTAGAAGATGATCATAATTTTTTGATTTATCCAGAAACTGATATGACACATATTCGGAAG
GCTATTGATGATTACGGACCTGAATATGTCATTATCGATTCTATTCAGACGATGCAACAACCAGATGTCAATTCGGCAGT
TGGATCAGTTGCACAAATTCGTGAGACGACAGCTGAATTATTGCAGATCGCTAAAACCAATGGGATTACGATTTTCGTCG
TTGGTCATGTTACCAAAGATGGTGCTATTGCTGGACCGAAAATATTAGAACACATGGTTGATACAGTGCTTTATTTTGAA
GGTGACAATCAACGTAGCTATCGATTATTACGGGCTGTCAAAAATCGATTTGGTTCAACTAATGAACTCGGAGTTTTTGA
AATGCAGCAGGAAGGCTTGACGGAGGTTTTGAACCCTTCTGAAATGTTTTTGGAAGAACGGATGGAAGCTACCACTGGTT
CAGCAGTAGTTGTGGCCTTAGAGGGTTCACGACCTATTTTGGTAGAAGTGCAGGCTTTAGTGACGCCAACTGTGTTTGGA
AACGCTCAACGAACCAGTTCGGGAATTGATCGTAATCGGGTGTCACTGATTATGGCGGTATTGGAAAAAAGAACCAACAT
ATTATTACAAAATCAGGATGCCTATGTTCGAGCTGCCGGTGGGGTTAAACTCAATGAACCTGCAGTTGATTTAGCTTTGG
CAGTAGCAATTGCATCCAGTTATCGTGAGGCAGAGACTCGGCTAACTGACGCCTTTGTGGGCGAAATTGGTTTAACTGGT
GAGATTAGGCGAGTACCACATATTGAAGAACGGATCACGGAAGCACAAAAATTAGGGTTTAAGCGGATTTTCATTCCGAA
AAATAGTTTAAAGGAAATGCTGAAAATTGAAGGGATTAAAGTGATCACAGTTCAAACGCTCCGTGAGGCTTTAGATCTCG
CGTTGAGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

63.193

98.904

0.625
  radA Streptococcus pneumoniae Rx1

63.193

98.904

0.625
  radA Streptococcus pneumoniae D39

63.193

98.904

0.625
  radA Streptococcus pneumoniae R6

63.193

98.904

0.625
  radA Streptococcus pneumoniae TIGR4

63.193

98.904

0.625
  radA Streptococcus mitis SK321

63.193

98.904

0.625
  radA Bacillus subtilis subsp. subtilis str. 168

59.3

100

0.594

Multiple sequence alignment