Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C1P57_RS09895 Genome accession   NZ_CP026846
Coordinates   2005022..2005651 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella boydii strain 59-2708     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2000022..2010651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1P57_RS09875 - 2000408..2002168 (-) 1761 WP_000156493.1 Lon protease family protein -
  C1P57_RS09880 matP 2002354..2002806 (+) 453 WP_000877156.1 macrodomain Ter protein MatP -
  C1P57_RS09885 ompA 2002882..2003937 (-) 1056 WP_004991512.1 porin OmpA -
  C1P57_RS09890 sulA 2004294..2004803 (-) 510 WP_078166432.1 SOS-induced cell division inhibitor SulA -
  C1P57_RS09895 sxy/tfoX 2005022..2005651 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C1P57_RS09900 yccS 2005614..2007776 (-) 2163 WP_134795673.1 YccS family putative transporter -
  C1P57_RS09905 - 2007786..2008232 (-) 447 WP_062882281.1 YccF domain-containing protein -
  C1P57_RS09910 helD 2008355..2010409 (+) 2055 WP_004978416.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=272948 C1P57_RS09895 WP_000839153.1 2005022..2005651(+) (sxy/tfoX) [Shigella boydii strain 59-2708]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=272948 C1P57_RS09895 WP_000839153.1 2005022..2005651(+) (sxy/tfoX) [Shigella boydii strain 59-2708]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTTAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment