Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BMASAVP1_RS08175 Genome accession   NC_008785
Coordinates   197638..199224 (+) Length   528 a.a.
NCBI ID   WP_004198023.1    Uniprot ID   A0AAX1X0Q2
Organism   Burkholderia mallei SAVP1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 192638..204224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMASAVP1_RS08155 (BMASAVP1_A0191) - 193494..194957 (+) 1464 WP_004191998.1 IS1182-like element ISBma2 family transposase -
  BMASAVP1_RS08160 (BMASAVP1_A0192) - 195109..196509 (-) 1401 WP_004198019.1 ammonium transporter -
  BMASAVP1_RS08165 (BMASAVP1_A0193) - 196542..196880 (-) 339 WP_004198020.1 P-II family nitrogen regulator -
  BMASAVP1_RS08170 (BMASAVP1_A0194) - 197249..197500 (+) 252 WP_004198021.1 accessory factor UbiK family protein -
  BMASAVP1_RS08175 (BMASAVP1_A0195) comM 197638..199224 (+) 1587 WP_004198023.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BMASAVP1_RS08180 (BMASAVP1_A0196) - 199639..200103 (-) 465 WP_004185200.1 GNAT family N-acetyltransferase -
  BMASAVP1_RS30865 (BMASAVP1_A0197) - 200293..200481 (+) 189 WP_004198025.1 hypothetical protein -
  BMASAVP1_RS08190 (BMASAVP1_A0198) - 200602..201381 (+) 780 WP_004198026.1 thioesterase II family protein -
  BMASAVP1_RS08195 (BMASAVP1_A0199) - 202046..202855 (-) 810 WP_004198027.1 hypothetical protein -
  BMASAVP1_RS08200 (BMASAVP1_A0200) - 202929..203465 (+) 537 WP_004198028.1 peroxiredoxin family protein -

Sequence

Protein


Download         Length: 528 a.a.        Molecular weight: 55454.32 Da        Isoelectric Point: 7.4051

>NTDB_id=27294 BMASAVP1_RS08175 WP_004198023.1 197638..199224(+) (comM) [Burkholderia mallei SAVP1]
MSLAVVRSRAPAAGRAPEVTVEVHLANGLPSFSIVGLPDLEVRESRERVRAALQNCGFEFPVRRITVNLAPADLPKESGR
FDLPIALGILAASGQLPAGALDGREFAGELSLTGALRPMRGAFAMACGTARGQQADDDGSPAQAESPPARATAPNAAELY
LPLPSAAEAALVPGVTVYGAADLPALCAHLADTPDGRLAPVAAPRLDALPAAATADLADVIGQAGAKRALEVAAAGGHHM
LMIGPPGAGKSMLAARLPALLPPLTDDEALTSAAILSSSRAGFSPAQWRRRPFRAPHHSSSSAALVGGRNPPQPGEITLA
HLGVLFLDELPEFDRHVLETLREPLEAGRITISRAALQADFPAACQLIAAMNPCPCGWRGDPGGRCRCSPDIAARYLRKL
SGPLLDRIDIQIEIPALTPAELAERPAAAGESSETVAARVALARERQFARQRKTNHMLTGRETDTLCRPDSTGETLLRDA
GERFRWSARAYYRVLKVARTIADLAGDDAPSAAHIAEAIRYRRAFGPA

Nucleotide


Download         Length: 1587 bp        

>NTDB_id=27294 BMASAVP1_RS08175 WP_004198023.1 197638..199224(+) (comM) [Burkholderia mallei SAVP1]
ATGTCGCTTGCCGTGGTGCGCAGCCGCGCGCCCGCTGCCGGCCGTGCGCCGGAAGTCACCGTCGAAGTCCATCTCGCCAA
CGGGCTGCCGTCGTTCTCGATCGTCGGGCTGCCCGATCTCGAAGTGCGCGAAAGCCGCGAGCGCGTGCGCGCCGCGCTGC
AGAACTGCGGGTTCGAGTTTCCCGTGCGGCGCATCACCGTCAACCTCGCGCCGGCCGATTTGCCGAAGGAGTCCGGCCGC
TTCGATCTGCCGATCGCGCTCGGCATTCTCGCCGCGAGCGGCCAGCTTCCGGCCGGCGCGCTCGACGGCCGCGAGTTCGC
GGGCGAGCTGTCGCTCACGGGCGCGCTGCGGCCGATGCGCGGCGCGTTCGCGATGGCGTGCGGCACGGCGCGCGGCCAGC
AGGCGGACGACGACGGCTCGCCCGCGCAAGCCGAATCGCCGCCCGCGCGGGCGACGGCGCCGAACGCCGCCGAGCTCTAC
TTGCCGCTGCCGAGCGCGGCCGAGGCGGCGCTCGTGCCGGGCGTGACCGTGTACGGCGCGGCCGATCTGCCCGCGCTGTG
CGCGCACCTCGCCGACACGCCGGACGGGCGGCTCGCCCCCGTCGCCGCGCCCCGGCTCGACGCGCTCCCCGCCGCAGCGA
CGGCCGATCTCGCCGATGTGATCGGCCAGGCGGGCGCGAAGCGCGCGCTCGAAGTCGCCGCCGCGGGCGGCCACCACATG
CTGATGATCGGGCCGCCGGGCGCGGGCAAATCGATGCTCGCCGCGCGCCTGCCCGCCCTCTTGCCGCCGCTCACCGATGA
CGAGGCGCTGACGTCGGCCGCGATCCTGTCGTCGAGCCGCGCGGGCTTCTCGCCCGCTCAATGGCGGCGGCGCCCGTTTC
GCGCGCCGCATCACTCGTCGAGCTCGGCCGCGCTCGTCGGCGGCCGCAATCCGCCGCAGCCGGGCGAGATCACGCTCGCA
CACCTGGGCGTGCTGTTCCTCGACGAGCTGCCGGAATTCGACCGGCACGTGCTCGAGACGCTGCGCGAGCCGCTCGAGGC
CGGCCGCATCACGATCTCGCGCGCCGCGCTGCAGGCGGATTTTCCGGCGGCGTGCCAACTGATCGCCGCGATGAATCCGT
GCCCGTGCGGCTGGCGCGGCGACCCGGGCGGCCGCTGCCGCTGCTCGCCCGACATCGCCGCGCGCTATCTGCGCAAGCTG
TCCGGGCCGCTCCTCGACCGGATCGACATCCAGATCGAGATTCCCGCGCTCACGCCCGCCGAGCTGGCCGAGCGGCCGGC
GGCCGCCGGCGAATCGAGCGAAACCGTGGCCGCGCGCGTCGCGCTCGCGCGCGAGCGGCAATTCGCGAGGCAGCGCAAGA
CCAACCACATGTTGACGGGCCGCGAGACCGATACGCTCTGCCGCCCGGACAGCACGGGCGAGACGCTGCTGCGTGACGCG
GGCGAGCGGTTCCGCTGGTCGGCGCGCGCGTACTACCGCGTGCTGAAGGTCGCGCGGACGATCGCGGACCTCGCGGGCGA
CGACGCGCCGAGCGCCGCGCATATCGCCGAGGCGATCCGGTATCGACGGGCGTTCGGGCCGGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(216-421)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-522)

Subunit ChlI of Mg-chelatase (ChlI)

(21-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.046

99.242

0.487
  comM Vibrio campbellii strain DS40M4

47.51

98.864

0.47
  comM Haemophilus influenzae Rd KW20

47.036

99.053

0.466
  comM Legionella pneumophila str. Paris

46.476

99.432

0.462
  comM Legionella pneumophila strain ERS1305867

46.476

99.432

0.462
  comM Glaesserella parasuis strain SC1401

46.552

98.864

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.967

98.295

0.422

Multiple sequence alignment