Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C1P67_RS19260 Genome accession   NZ_CP026840
Coordinates   3717815..3718444 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella dysenteriae strain ATCC 9753     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3712815..3723444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1P67_RS19240 - 3713222..3714982 (-) 1761 WP_000156488.1 Lon protease family protein -
  C1P67_RS19245 matP 3715168..3715620 (+) 453 WP_000877160.1 macrodomain Ter protein MatP -
  C1P67_RS19250 ompA 3715696..3716730 (-) 1035 WP_047204565.1 porin OmpA -
  C1P67_RS19255 sulA 3717087..3717596 (-) 510 WP_000288708.1 SOS-induced cell division inhibitor SulA -
  C1P67_RS19260 sxy/tfoX 3717815..3718444 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C1P67_RS19265 yccS 3718407..3720569 (-) 2163 WP_000875021.1 YccS family putative transporter -
  C1P67_RS19270 - 3720579..3721025 (-) 447 WP_001261235.1 YccF domain-containing protein -
  C1P67_RS19275 helD 3721148..3723202 (+) 2055 WP_000420537.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=272938 C1P67_RS19260 WP_000839153.1 3717815..3718444(+) (sxy/tfoX) [Shigella dysenteriae strain ATCC 9753]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=272938 C1P67_RS19260 WP_000839153.1 3717815..3718444(+) (sxy/tfoX) [Shigella dysenteriae strain ATCC 9753]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCACTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment