Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C1P56_RS09475 Genome accession   NZ_CP026836
Coordinates   1768854..1769483 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella boydii strain ATCC 49812     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1763854..1774483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1P56_RS09460 helD 1764096..1766150 (-) 2055 WP_004999792.1 DNA helicase IV -
  C1P56_RS09465 - 1766273..1766719 (+) 447 WP_001261235.1 YccF domain-containing protein -
  C1P56_RS09470 yccS 1766729..1768891 (+) 2163 WP_133299676.1 YccS family putative transporter -
  C1P56_RS09475 sxy/tfoX 1768854..1769483 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C1P56_RS09480 sulA 1769702..1770211 (+) 510 WP_119171769.1 SOS-induced cell division inhibitor SulA -
  C1P56_RS09485 ompA 1770568..1771623 (+) 1056 WP_119171768.1 porin OmpA -
  C1P56_RS09490 matP 1771699..1772151 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C1P56_RS09495 - 1772337..1774097 (+) 1761 WP_119171767.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=272901 C1P56_RS09475 WP_000839153.1 1768854..1769483(-) (sxy/tfoX) [Shigella boydii strain ATCC 49812]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=272901 C1P56_RS09475 WP_000839153.1 1768854..1769483(-) (sxy/tfoX) [Shigella boydii strain ATCC 49812]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTTAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment