Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C5B81_RS08610 Genome accession   NZ_CP026832
Coordinates   1684621..1685250 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella dysenteriae strain ATCC 49346     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1679621..1690250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5B81_RS08590 - 1680022..1681782 (-) 1761 WP_000156488.1 Lon protease family protein -
  C5B81_RS08595 matP 1681968..1682420 (+) 453 WP_000877160.1 macrodomain Ter protein MatP -
  C5B81_RS08600 ompA 1682496..1683536 (-) 1041 WP_005042889.1 porin OmpA -
  C5B81_RS08605 sulA 1683893..1684402 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C5B81_RS08610 sxy/tfoX 1684621..1685250 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C5B81_RS08615 yccS 1685213..1687375 (-) 2163 WP_134801086.1 YccS family putative transporter -
  C5B81_RS08620 - 1687385..1687831 (-) 447 WP_001261235.1 YccF domain-containing protein -
  C5B81_RS08625 helD 1687954..1690008 (+) 2055 WP_005043009.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=272862 C5B81_RS08610 WP_000839153.1 1684621..1685250(+) (sxy/tfoX) [Shigella dysenteriae strain ATCC 49346]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=272862 C5B81_RS08610 WP_000839153.1 1684621..1685250(+) (sxy/tfoX) [Shigella dysenteriae strain ATCC 49346]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCACTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment