Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C1P70_RS20385 Genome accession   NZ_CP026828
Coordinates   3864004..3864633 (+) Length   209 a.a.
NCBI ID   WP_113069407.1    Uniprot ID   -
Organism   Shigella dysenteriae strain ATCC 12037     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3859004..3869633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1P70_RS20365 - 3859411..3861171 (-) 1761 WP_134807233.1 Lon protease family protein -
  C1P70_RS20370 matP 3861357..3861809 (+) 453 WP_000877160.1 macrodomain Ter protein MatP -
  C1P70_RS20375 ompA 3861885..3862919 (-) 1035 WP_047204565.1 porin OmpA -
  C1P70_RS20380 sulA 3863276..3863785 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C1P70_RS20385 sxy/tfoX 3864004..3864633 (+) 630 WP_113069407.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C1P70_RS20390 yccS 3864596..3866758 (-) 2163 WP_000875021.1 YccS family putative transporter -
  C1P70_RS20395 - 3866768..3867214 (-) 447 WP_001261235.1 YccF domain-containing protein -
  C1P70_RS20400 helD 3867337..3869391 (+) 2055 WP_134807328.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24175.07 Da        Isoelectric Point: 9.2180

>NTDB_id=272829 C1P70_RS20385 WP_113069407.1 3864004..3864633(+) (sxy/tfoX) [Shigella dysenteriae strain ATCC 12037]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEVILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=272829 C1P70_RS20385 WP_113069407.1 3864004..3864633(+) (sxy/tfoX) [Shigella dysenteriae strain ATCC 12037]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGTGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATAGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCACTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment