Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C1P70_RS06105 Genome accession   NZ_CP026828
Coordinates   1192171..1192707 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Shigella dysenteriae strain ATCC 12037     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1187171..1197707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1P70_RS06085 aphA 1187460..1188173 (+) 714 WP_005026022.1 acid phosphatase AphA -
  C1P70_RS06090 - 1188284..1188700 (+) 417 WP_000270377.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C1P70_RS06095 - 1188704..1189060 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  C1P70_RS06100 uvrA 1189095..1191917 (-) 2823 WP_000357691.1 excinuclease ABC subunit UvrA -
  C1P70_RS06105 ssb 1192171..1192707 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  C1P70_RS06110 - 1192806..1193087 (-) 282 WP_001295689.1 YjcB family protein -
  C1P70_RS06115 pdeC 1193517..1194251 (+) 735 Protein_1174 c-di-GMP phosphodiesterase PdeC -
  C1P70_RS06120 - 1194308..1195005 (+) 698 WP_094106546.1 IS1 family transposase -
  C1P70_RS06125 - 1195083..1195780 (+) 698 WP_134795416.1 IS1-like element IS1SD family transposase -
  C1P70_RS06130 pdeC 1195797..1196276 (+) 480 Protein_1177 c-di-GMP phosphodiesterase PdeC -
  C1P70_RS06135 soxS 1196279..1196602 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  C1P70_RS06140 soxR 1196688..1197152 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=272823 C1P70_RS06105 WP_000168305.1 1192171..1192707(+) (ssb) [Shigella dysenteriae strain ATCC 12037]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=272823 C1P70_RS06105 WP_000168305.1 1192171..1192707(+) (ssb) [Shigella dysenteriae strain ATCC 12037]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment