Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C5B75_RS12360 Genome accession   NZ_CP026827
Coordinates   2050304..2050933 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella dysenteriae strain ATCC 12021     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2045304..2055933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5B75_RS12345 helD 2045546..2047600 (-) 2055 WP_001295354.1 DNA helicase IV -
  C5B75_RS12350 - 2047723..2048169 (+) 447 WP_001261235.1 YccF domain-containing protein -
  C5B75_RS12355 yccS 2048179..2050341 (+) 2163 WP_128875254.1 YccS family putative transporter -
  C5B75_RS12360 sxy/tfoX 2050304..2050933 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C5B75_RS12365 sulA 2051152..2051661 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C5B75_RS12370 ompA 2052018..2053070 (+) 1053 WP_000750419.1 porin OmpA -
  C5B75_RS12375 matP 2053145..2053597 (-) 453 WP_119169887.1 macrodomain Ter protein MatP -
  C5B75_RS12380 - 2053783..2055543 (+) 1761 WP_000156531.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=272804 C5B75_RS12360 WP_000839153.1 2050304..2050933(-) (sxy/tfoX) [Shigella dysenteriae strain ATCC 12021]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=272804 C5B75_RS12360 WP_000839153.1 2050304..2050933(-) (sxy/tfoX) [Shigella dysenteriae strain ATCC 12021]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAATTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment