Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECE24377A_RS25900 Genome accession   NC_009801
Coordinates   4884333..4884809 (+) Length   158 a.a.
NCBI ID   WP_001186775.1    Uniprot ID   A7ZVJ5
Organism   Escherichia coli O139:H28 str. E24377A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4879333..4889809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECE24377A_RS25870 (EcE24377A_4892) - 4879454..4882300 (+) 2847 WP_000820595.1 Ag43/Cah family autotransporter adhesin -
  ECE24377A_RS25875 (EcE24377A_4893) - 4882371..4882566 (+) 196 Protein_4632 DUF905 family protein -
  ECE24377A_RS25885 (EcE24377A_4894) - 4882684..4883502 (+) 819 WP_001234652.1 DUF932 domain-containing protein -
  ECE24377A_RS25895 (EcE24377A_4895) - 4883844..4884317 (+) 474 WP_000855059.1 antirestriction protein -
  ECE24377A_RS25900 (EcE24377A_4896) radC 4884333..4884809 (+) 477 WP_001186775.1 RadC family protein Machinery gene
  ECE24377A_RS25905 (EcE24377A_4897) - 4884872..4885093 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  ECE24377A_RS25915 (EcE24377A_4899) - 4885256..4885624 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ECE24377A_RS25920 (EcE24377A_4900) - 4885714..4886088 (+) 375 WP_000854765.1 TA system toxin CbtA family protein -
  ECE24377A_RS25925 (EcE24377A_4901) - 4886085..4886576 (+) 492 WP_000976842.1 DUF5983 family protein -
  ECE24377A_RS25930 (EcE24377A_4902) - 4886593..4886769 (+) 177 WP_000839290.1 DUF957 domain-containing protein -
  ECE24377A_RS30640 - 4886875..4887024 (+) 150 Protein_4641 hypothetical protein -
  ECE24377A_RS31525 - 4886994..4887128 (+) 135 Protein_4642 transcriptional regulator -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17687.30 Da        Isoelectric Point: 7.1437

>NTDB_id=27279 ECE24377A_RS25900 WP_001186775.1 4884333..4884809(+) (radC) [Escherichia coli O139:H28 str. E24377A]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=27279 ECE24377A_RS25900 WP_001186775.1 4884333..4884809(+) (radC) [Escherichia coli O139:H28 str. E24377A]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZVJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment