Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C1P83_RS01325 Genome accession   NZ_CP026811
Coordinates   275186..275815 (+) Length   209 a.a.
NCBI ID   WP_000839131.1    Uniprot ID   -
Organism   Shigella flexneri strain 64-5500     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 270186..280815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1P83_RS01305 - 270587..272347 (-) 1761 WP_000156535.1 Lon protease family protein -
  C1P83_RS01310 matP 272533..272985 (+) 453 WP_000877160.1 macrodomain Ter protein MatP -
  C1P83_RS01315 ompA 273061..274101 (-) 1041 WP_000750416.1 porin OmpA -
  C1P83_RS01320 sulA 274458..274967 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C1P83_RS01325 sxy/tfoX 275186..275815 (+) 630 WP_000839131.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C1P83_RS01330 yccS 275778..277940 (-) 2163 WP_000875021.1 YccS family putative transporter -
  C1P83_RS01335 - 277950..278396 (-) 447 WP_001261235.1 YccF domain-containing protein -
  C1P83_RS01340 helD 278519..280573 (+) 2055 WP_000420537.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24177.10 Da        Isoelectric Point: 9.2180

>NTDB_id=272716 C1P83_RS01325 WP_000839131.1 275186..275815(+) (sxy/tfoX) [Shigella flexneri strain 64-5500]
MKSLSYKRIYKSQEYLAMLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=272716 C1P83_RS01325 WP_000839131.1 275186..275815(+) (sxy/tfoX) [Shigella flexneri strain 64-5500]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAATGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTTAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCACTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment