Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C1P73_RS00055 Genome accession   NZ_CP026805
Coordinates   9706..10335 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella dysenteriae strain 2017C-4522     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4706..15335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1P73_RS00035 - 5107..6867 (-) 1761 WP_000156488.1 Lon protease family protein -
  C1P73_RS00040 matP 7053..7505 (+) 453 WP_000877160.1 macrodomain Ter protein MatP -
  C1P73_RS00045 ompA 7581..8621 (-) 1041 WP_005042889.1 porin OmpA -
  C1P73_RS00050 sulA 8978..9487 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C1P73_RS00055 sxy/tfoX 9706..10335 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C1P73_RS00060 yccS 10298..12460 (-) 2163 WP_000875021.1 YccS family putative transporter -
  C1P73_RS00065 - 12470..12916 (-) 447 WP_001261235.1 YccF domain-containing protein -
  C1P73_RS00070 helD 13039..15093 (+) 2055 WP_005043009.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=272677 C1P73_RS00055 WP_000839153.1 9706..10335(+) (sxy/tfoX) [Shigella dysenteriae strain 2017C-4522]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=272677 C1P73_RS00055 WP_000839153.1 9706..10335(+) (sxy/tfoX) [Shigella dysenteriae strain 2017C-4522]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCACTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment