Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C1P88_RS12495 Genome accession   NZ_CP026803
Coordinates   2389770..2390399 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella flexneri strain 89-141     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2384770..2395399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1P88_RS12475 - 2385167..2386927 (-) 1761 WP_000156533.1 Lon protease family protein -
  C1P88_RS12480 matP 2387112..2387564 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C1P88_RS12485 ompA 2387640..2388686 (-) 1047 WP_005047463.1 porin OmpA -
  C1P88_RS12490 sulA 2389042..2389551 (-) 510 WP_000288715.1 SOS-induced cell division inhibitor SulA -
  C1P88_RS12495 sxy/tfoX 2389770..2390399 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C1P88_RS12500 yccS 2390362..2392524 (-) 2163 WP_000875055.1 YccS family putative transporter -
  C1P88_RS12505 - 2392534..2392980 (-) 447 WP_001261235.1 YccF domain-containing protein -
  C1P88_RS12510 helD 2393103..2395163 (+) 2061 WP_005074173.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=272666 C1P88_RS12495 WP_000839153.1 2389770..2390399(+) (sxy/tfoX) [Shigella flexneri strain 89-141]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=272666 C1P88_RS12495 WP_000839153.1 2389770..2390399(+) (sxy/tfoX) [Shigella flexneri strain 89-141]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAGCTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment