Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D1095_RS10420 Genome accession   NZ_CP031875
Coordinates   2208669..2209331 (+) Length   220 a.a.
NCBI ID   WP_005599756.1    Uniprot ID   A3N3Q8
Organism   Actinobacillus pleuropneumoniae serovar 2 str. S1536     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2203669..2214331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1095_RS10385 (D1095_10465) - 2204107..2204667 (-) 561 WP_005602866.1 TIGR00730 family Rossman fold protein -
  D1095_RS10390 (D1095_10470) - 2204730..2205053 (+) 324 WP_005602867.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  D1095_RS10395 (D1095_10475) crp 2205102..2205776 (-) 675 WP_005599747.1 cAMP-activated global transcriptional regulator CRP Regulator
  D1095_RS10400 (D1095_10480) - 2205854..2206072 (-) 219 WP_005599748.1 YheU family protein -
  D1095_RS10405 (D1095_10485) slmA 2206078..2206686 (-) 609 WP_005618613.1 nucleoid occlusion factor SlmA -
  D1095_RS10410 (D1095_10490) dut 2206792..2207247 (-) 456 WP_005599752.1 dUTP diphosphatase -
  D1095_RS10415 (D1095_10495) coaBC 2207256..2208461 (-) 1206 WP_005602882.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  D1095_RS10420 (D1095_10500) radC 2208669..2209331 (+) 663 WP_005599756.1 RadC family protein Machinery gene
  D1095_RS10425 (D1095_10505) rpmB 2209500..2209736 (+) 237 WP_005599762.1 50S ribosomal protein L28 -
  D1095_RS10430 (D1095_10510) rpmG 2209748..2209918 (+) 171 WP_005599764.1 50S ribosomal protein L33 -
  D1095_RS10435 (D1095_10520) - 2210283..2210843 (+) 561 WP_005599767.1 hypothetical protein -
  D1095_RS10440 (D1095_10525) - 2211124..2212488 (+) 1365 WP_005599768.1 diaminobutyrate--2-oxoglutarate transaminase -
  D1095_RS10445 (D1095_10530) ddc 2212617..2214152 (+) 1536 WP_005618615.1 L-2,4-diaminobutyrate decarboxylase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25014.07 Da        Isoelectric Point: 5.7943

>NTDB_id=272532 D1095_RS10420 WP_005599756.1 2208669..2209331(+) (radC) [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
MDNVVLMPREKLLASGAESLTDQELLAIFLRTGIKGMPVMQLSQEVLNGFGSLRELLSADLATFCRMKGLGQTQFIQLQA
SKEMTKRYLAQQMQVRENINEPYLAVMCFQAELESEEREVFMVMFLDNQNRLIKKEKMFYGTINQATVYPREIIKEALKC
NAAAIIVAHNHPSGNCTPSESDRALTKKLEMACDLVGIRFVDHIVVGKGDYFSFEEEKFR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=272532 D1095_RS10420 WP_005599756.1 2208669..2209331(+) (radC) [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
ATGGATAACGTTGTATTAATGCCAAGAGAAAAATTATTGGCCTCCGGAGCGGAATCACTCACCGATCAAGAATTGTTGGC
GATTTTTCTACGTACGGGTATCAAGGGCATGCCTGTTATGCAATTATCGCAAGAAGTATTGAACGGTTTCGGTTCGTTAC
GAGAATTGTTAAGTGCTGATTTAGCGACTTTCTGCCGTATGAAAGGCTTAGGACAAACGCAATTTATTCAGTTGCAAGCC
TCAAAGGAAATGACTAAGCGTTATTTAGCACAACAAATGCAAGTGAGAGAAAATATTAATGAACCTTATTTAGCCGTAAT
GTGCTTTCAAGCCGAATTGGAATCGGAAGAACGAGAGGTATTTATGGTGATGTTTCTTGATAATCAGAATCGGTTGATTA
AAAAAGAAAAAATGTTTTACGGCACCATTAATCAAGCAACGGTTTACCCTAGAGAAATCATTAAAGAAGCATTAAAATGT
AATGCGGCGGCAATTATTGTTGCACACAATCATCCGTCGGGAAATTGTACTCCTTCCGAATCGGATAGAGCATTGACGAA
AAAACTGGAAATGGCGTGCGATTTGGTCGGTATTCGCTTTGTCGATCATATCGTTGTCGGCAAAGGCGATTATTTTTCCT
TCGAAGAAGAGAAGTTTCGCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(8-74)

RadC-like JAB domain (RadC)

(102-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N3Q8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

63.721

97.727

0.623