Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   D1095_RS03245 Genome accession   NZ_CP031875
Coordinates   723909..725453 (-) Length   514 a.a.
NCBI ID   WP_005600843.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae serovar 2 str. S1536     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 718909..730453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1095_RS03220 (D1095_03280) efeO 719793..720605 (+) 813 WP_005596972.1 iron uptake system protein EfeO -
  D1095_RS03225 (D1095_03285) efeB 720620..721810 (+) 1191 WP_005600839.1 iron uptake transporter deferrochelatase/peroxidase subunit -
  D1095_RS03230 (D1095_03290) - 721821..722441 (+) 621 WP_005596976.1 hypothetical protein -
  D1095_RS03235 (D1095_03295) - 722480..723298 (-) 819 WP_005600841.1 PHP domain-containing protein -
  D1095_RS03240 (D1095_03300) - 723302..723892 (-) 591 WP_005596980.1 hypothetical protein -
  D1095_RS03245 (D1095_03305) sbcB 723909..725453 (-) 1545 WP_005600843.1 exodeoxyribonuclease I Machinery gene
  D1095_RS03250 (D1095_03310) - 725695..727101 (-) 1407 WP_005614935.1 chloride channel protein -
  D1095_RS03255 (D1095_03315) asnS 727309..728712 (+) 1404 WP_005600855.1 asparagine--tRNA ligase -
  D1095_RS03260 (D1095_03320) epmB 728816..729817 (-) 1002 WP_005600857.1 EF-P beta-lysylation protein EpmB -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 58649.80 Da        Isoelectric Point: 5.9107

>NTDB_id=272498 D1095_RS03245 WP_005600843.1 723909..725453(-) (sbcB) [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTGITPQQCNAEGVPEPEF
AARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGMPNF
KLENLTKANGIAHENAHDAMADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA
WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHINRCPIIAPAKVLLPENAARL
GIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSANVETTLYDGFFSPADKNNMAILRTLPPRELAHHGLQFADER
VEALLFHYRARHYPETLSRAEQIKWQKYCHQQIDAKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIAEFQVVKHT
ANEQNEQLVSALNQVAEQRVNKAAKLEMLKTLIK

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=272498 D1095_RS03245 WP_005600843.1 723909..725453(-) (sbcB) [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
ATGAATAAAAATCTTACTTTTTTCTTTTATGATTACGAAAGTTTCGGTGTGAGTCCGGCGTTAGATCGTCCGGCACAGTT
TGCCGGTATTCGTACCGATAGTGATTTTAATATCATCGGTGAGCCGGTGATGTTTTATTGTAAGCAAACACCGGATTATT
TACCTTCGCCTGAAGCGGTGATGGTGACGGGTATTACTCCGCAACAGTGTAACGCTGAAGGCGTGCCGGAACCGGAATTT
GCTGCACGAATCCACGCTGAATTCAGCCAGCCGAACACTTGCATTTTAGGCTATAACAATATCCGTTATGACGATGAAAT
GACCCGTTATACCTTTTTCCGCAATTTCTTTGACCCGTATGAATATAGCTGGAAAAATGGTAATTCTCGTTGGGATCTGT
TAGATCTTGTTCGAGCTTGTTATGCACTGCGTCCGGACGGCATTGAATGGGTAATAGATGAAAACGGTATGCCGAATTTC
AAATTAGAGAATCTCACTAAAGCGAACGGCATTGCTCATGAAAATGCGCACGATGCAATGGCGGACGTTTACGCCACGAT
TGCGATGGCGAAATTGATTAAGCAAAAACAGCCGAAACTTTTCCAATTTTTCTTTGAAAATCGTGGTAAGAAAGAAATTG
AGAAAATGATTGATACCGGTGAAATGACTCCGTTGGTACACGTTTCCGGTATGTTTGGCAACGCACGTGCTAATACCGCT
TGGATTGCACCGATAGCATGGCACCCAACTAATCAAAATCAAGTGTTATGTTGCGATCTATCCGGCGATGTTAGTGCCTT
ATTAACGGATTCAGCGGAAGAATTACGTACTCGTCTATACACTAAAAAAGAAGAGCTGGCTGAAGGTGTTGCACCCGTTC
CATTAAAAGGGGTGCATATTAATCGTTGTCCGATTATTGCCCCGGCAAAAGTGTTGTTGCCTGAAAATGCGGCTCGCTTA
GGCATTGATCGTGAGCGTTGTTTGGAAAATCTCAAATTACTGAAGGCGAATAAAAGTTTAGTGCGCGAGAAAGTGACCGA
AATTTTTATGGAAGAACGGAGCTTTGAGCCTTCTGCGAATGTGGAAACCACGCTGTATGACGGCTTTTTCTCACCGGCAG
ATAAAAATAATATGGCGATTTTGCGTACGTTACCGCCGCGAGAATTGGCGCATCACGGCTTACAATTCGCCGATGAACGA
GTAGAAGCTTTGTTATTTCATTATCGAGCCAGACATTATCCCGAAACATTGAGCCGAGCGGAACAGATTAAATGGCAAAA
ATATTGTCATCAGCAGATAGATGCCAAATCGGCACAATTTGCCGAAGCGATTGATAGCTTATTCCAAATTCATCACGATA
ATCCGGAAAAGGTAAAATTATTGGAAAATTTGACCGCTTACGCGGCACAAATTGCGGAATTTCAGGTAGTTAAACACACC
GCTAATGAACAAAATGAACAGTTGGTTTCAGCCTTAAACCAAGTGGCGGAACAGAGGGTGAATAAAGCGGCGAAGTTGGA
AATGCTAAAGACATTAATTAAATAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(208-469)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

54.176

90.856

0.492