Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   D1096_RS03710 Genome accession   NZ_CP031874
Coordinates   832626..834920 (-) Length   764 a.a.
NCBI ID   WP_012262953.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain S1421     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 827626..839920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1096_RS03685 (D1096_03700) - 828215..828457 (-) 243 WP_005597192.1 alternative ribosome-rescue factor A -
  D1096_RS03690 (D1096_03705) - 828625..829380 (+) 756 WP_005597193.1 class I SAM-dependent methyltransferase -
  D1096_RS03695 (D1096_03710) - 829439..830500 (+) 1062 WP_005604294.1 AI-2E family transporter -
  D1096_RS03700 (D1096_03715) - 830530..831459 (+) 930 WP_005604296.1 gluconeogenesis factor YvcK family protein -
  D1096_RS03705 (D1096_03720) queA 831507..832592 (+) 1086 WP_012262952.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  D1096_RS03710 (D1096_03725) rec2 832626..834920 (-) 2295 WP_012262953.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  D1096_RS03715 (D1096_03730) sstT 835020..836234 (-) 1215 WP_005597199.1 serine/threonine transporter SstT -
  D1096_RS03720 (D1096_03740) - 836483..836845 (+) 363 WP_005597201.1 diacylglycerol kinase -
  D1096_RS03725 (D1096_03745) ushA 836926..838569 (+) 1644 WP_012262954.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA -
  D1096_RS03730 (D1096_03750) - 838648..838947 (+) 300 WP_005597207.1 DUF4298 domain-containing protein -
  D1096_RS03735 (D1096_03755) - 839076..839441 (+) 366 WP_012262955.1 hypothetical protein -

Sequence

Protein


Download         Length: 764 a.a.        Molecular weight: 88748.74 Da        Isoelectric Point: 9.5967

>NTDB_id=272446 D1096_RS03710 WP_012262953.1 832626..834920(-) (rec2) [Actinobacillus pleuropneumoniae strain S1421]
MNLDRFSILICLTFLPLLWLPYQWFAFVILLFLIVVLYGLYTRCLMLLVFALVMGGSYYSVWQFAKKAENQTAGKYYEKI
EITRLVKQSTYQTAIAKRENNEQIYLHWQSDVPLVLGATYQAELQFRPISARANIGNFDRQRWYFAQHLQGSTTVREAKR
IEREQSTLRQAFLTKVRRQTETLAAQGLLLALAFGERAWINEHHWQIFQKTSTAHLIAISGLHIGLAFLCGFWCAKALQW
CLLRCKSWQAVGFYYFFAHIIGIIFAIGYSYFAGFSIPTIRALTAICFVLLCRFLRYHYTPWQYWWRVVTVLLLFDPITV
LSDSFWLSILAVMSLLIWYQYFPLSAFLRKFAYRKWGKIVRFCLGLIHLQCGILLIFTPVQFFFFEGISLTALPANLVIV
PLYSFVLVPLVLIGLLTDNGFNTWQLANRLIGYSLDYLETISQQWIWLSHRQQAQWLIIDLAILFILYGILHARTALYWY
KRYALLLCCQCVFYLFQLDKVPLQWITFDVGQGLAQAFIYYDTSGQKKAIFYDTGIGWGKHDNGGSMASIEILPYLRHHQ
IEVEAIFLSHDDNDHSGGAADLLNAYPNARLISSSLKPYANVQPEACIQGKRWRFGRLEFEAVYPKERVERAKNADSCII
LAKFDRFQILLTGDTGIEQERKIAELLNGIDFLQVAHHGSKTSSSHTLLAKSKPQLAVVSVGRWNPWRMPHPKVVERFEQ
HKIPLVTTAKQGMIIINFDSDKWQLKTARNDFSPWYRRLYGKNR

Nucleotide


Download         Length: 2295 bp        

>NTDB_id=272446 D1096_RS03710 WP_012262953.1 832626..834920(-) (rec2) [Actinobacillus pleuropneumoniae strain S1421]
ATGAATCTTGACCGCTTTTCTATTCTTATTTGTCTCACTTTTTTACCTCTTCTTTGGCTGCCGTATCAATGGTTTGCTTT
TGTTATTCTTCTTTTTCTAATTGTTGTGCTATACGGTTTATATACGCGTTGTTTAATGCTGCTGGTATTTGCGTTAGTAA
TGGGTGGAAGTTATTACTCCGTATGGCAGTTTGCAAAAAAGGCCGAAAATCAGACCGCCGGTAAATACTACGAAAAAATT
GAAATAACTCGTTTGGTTAAACAATCGACTTATCAAACGGCAATTGCTAAAAGGGAGAATAATGAACAGATTTATCTGCA
TTGGCAAAGTGACGTTCCTTTAGTTTTAGGCGCAACTTATCAGGCGGAACTGCAGTTTCGTCCGATTTCTGCACGTGCGA
ATATAGGTAATTTTGATCGGCAACGTTGGTATTTCGCCCAACATTTACAGGGAAGTACGACTGTACGAGAAGCAAAGCGA
ATTGAGCGGGAGCAAAGCACATTACGTCAAGCGTTCTTAACTAAGGTTCGACGACAGACCGAAACATTAGCCGCTCAAGG
ACTATTACTTGCTTTGGCATTCGGTGAACGAGCGTGGATTAATGAGCATCATTGGCAAATTTTCCAAAAGACTTCAACCG
CACATTTAATTGCGATTTCCGGCTTACATATCGGTTTGGCGTTTTTATGCGGATTTTGGTGCGCTAAGGCGTTGCAATGG
TGTTTATTACGTTGTAAGAGCTGGCAAGCGGTTGGATTTTACTACTTTTTTGCTCATATTATCGGAATCATTTTTGCGAT
AGGTTATAGTTATTTTGCCGGATTCTCCATACCGACCATACGTGCATTGACGGCGATTTGCTTCGTATTATTATGTCGAT
TCCTGCGCTATCACTATACGCCGTGGCAATATTGGTGGCGGGTTGTCACGGTATTGTTATTATTTGATCCGATTACCGTG
TTATCAGACAGTTTTTGGCTTTCTATTTTAGCCGTGATGAGTTTACTGATTTGGTATCAATATTTCCCGTTATCCGCTTT
TTTAAGAAAGTTTGCCTATCGTAAATGGGGAAAAATCGTTCGATTTTGTCTCGGACTCATCCATTTACAATGCGGTATTT
TGCTTATTTTTACCCCGGTACAATTTTTCTTTTTTGAGGGCATATCGCTTACGGCACTACCGGCAAATTTAGTGATCGTA
CCTTTATATAGTTTCGTATTAGTACCCTTGGTTTTAATCGGCTTATTAACCGATAACGGCTTTAATACTTGGCAATTAGC
GAATAGATTAATCGGCTATAGTTTAGATTATTTAGAAACGATTTCTCAACAGTGGATTTGGTTGAGTCATCGACAACAGG
CGCAATGGCTGATTATTGACTTAGCGATATTGTTTATTTTATATGGCATATTACATGCGCGAACCGCATTATACTGGTAT
AAAAGATATGCTTTATTATTGTGTTGTCAATGCGTTTTCTATTTATTTCAATTAGATAAAGTACCGTTACAGTGGATCAC
TTTTGATGTCGGGCAAGGGTTGGCTCAGGCGTTTATTTATTATGATACAAGCGGTCAAAAAAAGGCGATTTTTTACGATA
CTGGGATTGGATGGGGAAAGCATGATAACGGCGGATCTATGGCTTCGATTGAAATACTACCTTATTTACGCCACCATCAA
ATTGAAGTCGAAGCCATATTTTTAAGCCATGACGATAATGATCATTCCGGCGGAGCGGCGGATTTACTTAACGCTTATCC
GAATGCAAGACTTATTTCAAGTAGCCTTAAACCTTATGCAAACGTTCAACCTGAGGCTTGTATTCAAGGAAAAAGATGGC
GATTCGGCAGATTAGAATTTGAAGCCGTTTATCCTAAAGAGCGTGTAGAAAGAGCGAAAAATGCCGATTCTTGCATCATT
TTGGCAAAATTCGACCGCTTTCAAATATTATTAACCGGCGATACCGGCATTGAGCAAGAACGAAAAATCGCAGAACTATT
AAATGGTATTGATTTTTTGCAGGTGGCTCATCACGGCAGTAAAACCAGTAGTAGTCATACGCTATTGGCAAAAAGCAAAC
CTCAGTTAGCGGTAGTTTCCGTCGGACGTTGGAACCCGTGGAGAATGCCTCATCCAAAAGTGGTTGAGAGATTTGAACAG
CATAAGATTCCGTTAGTGACTACGGCAAAGCAGGGAATGATCATCATTAATTTTGATTCGGATAAATGGCAATTAAAGAC
GGCTCGAAACGATTTTTCACCTTGGTATCGGCGTTTATACGGAAAAAATAGATAA

Domains

Predicted by InterProScan.

Competence protein (Competence)

(192-468)

Metallo-beta-lactamase superfamily (Lactamase_B)

(525-702)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

40.233

100

0.407