Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECE24377A_RS18410 Genome accession   NC_009801
Coordinates   3370018..3370494 (+) Length   158 a.a.
NCBI ID   WP_001384108.1    Uniprot ID   A7ZRC3
Organism   Escherichia coli O139:H28 str. E24377A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3365018..3375494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECE24377A_RS18395 (EcE24377A_3347) - 3365436..3368282 (+) 2847 WP_000820449.1 Ag43/Cah family autotransporter adhesin -
  ECE24377A_RS18400 (EcE24377A_3348) - 3368610..3369428 (+) 819 WP_001234386.1 DUF932 domain-containing protein -
  ECE24377A_RS18405 (EcE24377A_3349) - 3369520..3370002 (+) 483 WP_000206657.1 antirestriction protein -
  ECE24377A_RS18410 (EcE24377A_3350) radC 3370018..3370494 (+) 477 WP_001384108.1 RadC family protein Machinery gene
  ECE24377A_RS18415 (EcE24377A_3351) - 3370581..3370802 (+) 222 WP_000692350.1 DUF987 domain-containing protein -
  ECE24377A_RS18420 (EcE24377A_3352) - 3370882..3371250 (+) 369 WP_001285604.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ECE24377A_RS18425 (EcE24377A_3353) cbtA 3371340..3371717 (+) 378 WP_000854821.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  ECE24377A_RS30150 - 3371714..3371911 (+) 198 Protein_3230 DUF5983 family protein -
  ECE24377A_RS30155 - 3371939..3372136 (+) 198 WP_085949090.1 DUF957 domain-containing protein -
  ECE24377A_RS18440 (EcE24377A_3355) - 3372221..3373063 (+) 843 WP_001280493.1 DUF4942 domain-containing protein -
  ECE24377A_RS18445 (EcE24377A_3356) - 3373401..3374459 (-) 1059 WP_000534925.1 site-specific integrase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17682.33 Da        Isoelectric Point: 6.9859

>NTDB_id=27242 ECE24377A_RS18410 WP_001384108.1 3370018..3370494(+) (radC) [Escherichia coli O139:H28 str. E24377A]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVIPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=27242 ECE24377A_RS18410 WP_001384108.1 3370018..3370494(+) (radC) [Escherichia coli O139:H28 str. E24377A]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATACTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACTGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCATCCCCAGCAAGGCAGACCGCCTTATCACTGAGCGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZRC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392