Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   D1097_RS03820 Genome accession   NZ_CP031873
Coordinates   826751..828295 (+) Length   514 a.a.
NCBI ID   WP_005604130.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae serovar 4 str. M62     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 821751..833295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1097_RS03805 (D1097_03795) epmB 822392..823393 (+) 1002 WP_005604135.1 EF-P beta-lysylation protein EpmB -
  D1097_RS03810 (D1097_03800) asnS 823495..824898 (-) 1404 WP_005604133.1 asparagine--tRNA ligase -
  D1097_RS03815 (D1097_03805) - 825106..826509 (+) 1404 WP_005596983.1 chloride channel protein -
  D1097_RS03820 (D1097_03810) sbcB 826751..828295 (+) 1545 WP_005604130.1 exodeoxyribonuclease I Machinery gene
  D1097_RS03825 (D1097_03815) - 828312..828902 (+) 591 WP_005604128.1 hypothetical protein -
  D1097_RS03830 (D1097_03820) - 828906..829724 (+) 819 WP_005604126.1 PHP domain-containing protein -
  D1097_RS03835 (D1097_03825) - 829763..830383 (-) 621 WP_005596976.1 hypothetical protein -
  D1097_RS03840 (D1097_03830) efeB 830394..831587 (-) 1194 WP_005604123.1 iron uptake transporter deferrochelatase/peroxidase subunit -
  D1097_RS03845 (D1097_03835) efeO 831599..832411 (-) 813 WP_005604121.1 iron uptake system protein EfeO -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 58547.64 Da        Isoelectric Point: 5.9094

>NTDB_id=272391 D1097_RS03820 WP_005604130.1 826751..828295(+) (sbcB) [Actinobacillus pleuropneumoniae serovar 4 str. M62]
MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTGITPQQCNAEGVPEPEF
AARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWVTDENGVPNF
KLENLTKANGIAHENAHDAMADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA
WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHINRCPIIAPAKVLLPENAARL
GIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSANVETTLYDGFFSPADKNNMAILRTLPPQELAHHGLQFAGER
VEALLFHYRARHYPETLSRAEQIKWQKYCHQQIDAKSVQFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIAEFQVVKHT
ANEQNEQLVSALNQVAEQRVNKAAKLEMLKTLIK

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=272391 D1097_RS03820 WP_005604130.1 826751..828295(+) (sbcB) [Actinobacillus pleuropneumoniae serovar 4 str. M62]
ATGAATAAAAATCTTACTTTTTTCTTTTATGATTACGAAAGTTTCGGTGTGAGTCCGGCGTTAGATCGTCCGGCACAGTT
TGCCGGTATTCGTACCGATAGTGATTTTAATATCATCGGTGAGCCGGTGATGTTTTATTGTAAGCAAACACCGGATTATT
TACCTTCGCCTGAAGCGGTGATGGTGACGGGTATTACTCCGCAACAGTGTAACGCTGAAGGCGTGCCGGAACCGGAATTT
GCCGCACGAATCCACGCTGAATTCAGCCAGCCGAACACTTGCATTTTAGGCTATAACAATATTCGTTATGACGATGAAAT
GACCCGTTATACCTTTTTCCGCAATTTCTTTGACCCGTATGAATATAGCTGGAAAAATGGTAATTCTCGTTGGGATCTGT
TAGATCTTGTTCGAGCTTGTTATGCACTGCGTCCGGACGGAATCGAATGGGTAACGGACGAAAACGGTGTGCCGAATTTC
AAATTAGAGAATCTCACTAAAGCGAACGGCATTGCTCATGAAAATGCGCACGATGCAATGGCGGATGTTTACGCCACGAT
TGCGATGGCGAAATTGATTAAGCAAAAACAGCCGAAACTTTTCCAATTTTTCTTTGAAAATCGTGGTAAGAAAGAAATTG
AGAAAATGATTGATACCGGTGAAATGACCCCGTTGGTACACGTTTCCGGTATGTTCGGTAATGCGCGTGCTAATACCGCT
TGGATTGCACCGATTGCGTGGCACCCAACTAATCAAAATCAAGTGTTATGTTGCGATCTATCCGGCGATGTTAGTGCCTT
ATTAACGGATTCAGCGGAAGAATTACGTACTCGTCTATACACTAAAAAAGAAGAGCTGGCTGAAGGTGTTGCACCCGTTC
CATTAAAAGGGGTACATATTAATCGTTGTCCGATTATTGCCCCAGCAAAAGTGTTGTTGCCTGAAAATGCGGCTCGCTTA
GGCATTGATCGTGAGCGTTGTTTGGAAAATCTCAAATTACTGAAGGCGAATAAAAGTTTAGTGCGTGAGAAAGTGACCGA
AATTTTTATGGAAGAACGGAGCTTTGAACCTTCTGCGAATGTGGAAACCACGCTGTATGACGGCTTTTTCTCACCGGCAG
ATAAAAATAATATGGCGATTTTGCGTACGTTACCGCCGCAAGAATTGGCGCATCACGGCTTACAGTTTGCCGGTGAACGA
GTAGAAGCTTTGTTATTTCATTATCGAGCCAGACATTATCCCGAAACATTGAGCCGAGCGGAACAGATTAAATGGCAGAA
ATATTGTCATCAGCAGATAGATGCCAAATCGGTACAATTTGCCGAAGCGATTGATAGCTTATTCCAAATTCATCACGATA
ATCCGGAAAAGGTAAAATTATTGGAAAATTTGACCGCTTACGCTGCACAAATTGCGGAATTTCAGGTAGTTAAACACACC
GCTAATGAACAAAATGAACAGTTGGTTTCAGCCTTAAACCAAGTGGCGGAACAGAGGGTGAATAAAGCGGCGAAGTTGGA
AATGCTAAAGACATTAATTAAATAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(9-188)

Exonuclease C-terminal (ExoI_SH3)

(208-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

53.961

90.856

0.49